Parental gene:

Srsf7, ENSRNOG00000027360

Aliases:Srsf7, Sfrs7
Description:splicing factor, arginine/serine-rich 7 [Source:RefSeq peptide;Acc:NP_001034124]
Organism:Rat (Rattus norvegicus)
Coordinates:6:2857411..2863365(-)


>ENSRNOG00000027360
ATGTCACGTTACGGGCGGTATGGAGGAGAAACCAAGGTATATGTTGGTAACCTGGGAACTGGCGCTGGTAAAGGAGAGTT
AGAAAGGGCATTCAGTTACTATGGGCCCTTAAGAACTGTATGGATTGCCAGAAATCCTCCAGGATTTGCCTTTGTGGAAT
TTGAAGACCCTAGAGATGCAGAGGATGCAGTTCGAGGATTGGATGGGAAAGTGATTTGTGGTTCTCGAGTGAGGGTTGAA
TTATCAACAGGCATGCCTCGGAGATCTCGGTTTGATAGGCCACCTGCCCGTCGTCCCTTTGATCCTAATGATAGATGCTA
TGAGTGTGGTGAAAAGGGACATTATGCTTATGACTGTCATCGCTATAGCCGACGAAGAAGAAGCAGGTCACGATCTAGAT
CACATTCCCGATCCAGGGGAAGGCGATACTCTCGCTCACGTAGTAGGAGCCGCGGTAGGAGGTCAAGATCAGCATCTCCT
CGACGATCAAGGTCCGTGTCTCTTCGTAGATCAAGATCAGCTTCACTCAGAAGATCTAGGTCTGGTTCTATAATAGGATC
GAGGTATTTCCAATCCCGCTCAAGGTCGAGATCAAGATCCAGGTCTATTTCACGACCAAGAAGCAGCCGATCAAAATCCA
GATCTCCATCTCCTAAAAGAAGTCGTTCCCCATCAGGAAGTCCACACAGAAGTGCAAGTCCAGAAAGAATGGACTGA

Library Parental gene expression (RPM)
SRP017611_liver 25 .55 RPM
SRP017611_kidney 33 .57 RPM
SRP017611_brain 38 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015988 ortholog_one2many 1 retrogene
retro_amel_1025,
Canis familiaris ENSCAFG00000029620 ortholog_one2many 1 retrogene
retro_cfam_652,
Dasypus novemcinctus ENSDNOG00000007821 ortholog_one2many 2 retrogenes
retro_dnov_317, retro_dnov_829,
Macropus eugenii ENSMEUG00000016459 ortholog_many2many 1 retrogene
retro_meug_1048,
Myotis lucifugus ENSMLUG00000009536 ortholog_many2many 2 retrogenes
retro_mluc_2005, retro_mluc_972,
Monodelphis domestica ENSMODG00000008669 ortholog_many2many 1 retrogene
retro_mdom_289,
Mus musculus ENSMUSG00000024097 ortholog_one2many 1 retrogene
retro_mmus_3288,
Otolemur garnettii ENSOGAG00000010169 ortholog_one2many 2 retrogenes
retro_ogar_3467, retro_ogar_3481,
Rattus norvegicus ENSRNOG00000000520 within_species_paralog 11 retrogenes
retro_rnor_1010, retro_rnor_1283, retro_rnor_1321, retro_rnor_1339, retro_rnor_1647, retro_rnor_1697, retro_rnor_1889, retro_rnor_2424, retro_rnor_634, retro_rnor_728, retro_rnor_790,
Rattus norvegicus ENSRNOG00000005513 other_paralog 1 retrogene
retro_rnor_2900,
Rattus norvegicus ENSRNOG00000006380 other_paralog 1 retrogene
retro_rnor_1752,
Sarcophilus harrisii ENSSHAG00000015970 ortholog_many2many 1 retrogene
retro_shar_72,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_478 83.40 97.90
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2. retro_rnor_1535 77.50 100.00
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3. retro_rnor_1977 67.14 58.40
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4. retro_rnor_1984 92.81 70.17
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5. retro_rnor_2419 83.33 100.00
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6. retro_rnor_2420 87.45 100.00
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7. retro_rnor_2421 83.33 100.00
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8. retro_rnor_2495 67.14 58.40
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9. retro_rnor_2501 84.09 73.53
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10. retro_rnor_2502 82.52 85.71
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11. retro_rnor_2503 83.33 100.00
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Download FASTA sequences of all ENSRNOG00000027360 retrocopies