RetrogeneDB ID:

retro_mluc_1149

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429799:2940671..2941228(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL19
Ensembl ID:ENSMLUG00000012555
Aliases:None
Description:Ribosomal protein L19 [Source:UniProtKB/TrEMBL;Acc:G1PKS6]


Retrocopy-Parental alignment summary:






>retro_mluc_1149
AGGCTTGCTTCCAGTGTCCTCTGCTATGGCGAAAAGAAGGTCTGGTTGGACCAAATGAGACCAATGAAATCACCAATGCC
AACTCCCATCAGCAGATTGGGAGGCTGATCAAAGATGGGCTGATCATCCTGAAGCCTGTGACTATTCATGCCCAGGCTCA
ATGCTAGAAAAACCCCTTGACCCTCAGCAAGGGCAGGCATAGGGGCATAGGTAAGTGAAACAGTACTGCCAATGCTAGAA
TGCCTGAGACAGTAACCTGGACGCGGAGGATGAGAATTCTTTGCTGGCTACTTAGAAGATACTGTGAATCTAAGATTGAC
CGCCACATGTACCACAGCCTGTACCTGTAAGTGAAGGATAACATGTTCAAAAACTAGTGGATTCTCATGGAACACCTCCA
AAAGCTGAAGGCAAACAAGGCTGGAAAGAAGCTTCTGGCTGACTAGGCCAAGGCCTACAGGTCTAAGACCAGGGAAGCTC
CCAAGTGCCTTGAAGAGTGGCTCCAGGCCAAGAAGGAGGGAATCATCAAGACTGCCCAGGAGGAAGAGACCAAGAAA

ORF - retro_mluc_1149 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.07 %
Parental protein coverage: 96.91 %
Number of stop codons detected: 5
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalRLASSVLRCGKKKVWLD-PNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMG
RLASSVL..G.KKVWLD.PNETNEI.NANS.QQI..LIKDGLII.KPVT.H..A.C.KN.L...KGRH.G
RetrocopyRLASSVLCYGEKKVWLD<PNETNEITNANSHQQIGRLIKDGLIILKPVTIHAQAQC*KNPLTLSKGRHRG
ParentalIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKA
IGK...TANARMPE.VTW.RRMRIL..LLRRY.ES.KIDRHMYHSLYL.VK.N.FKN..ILMEH..KLKA
RetrocopyIGK*NSTANARMPETVTWTRRMRILCWLLRRYCES-KIDRHMYHSLYL*VKDNMFKN*WILMEHLQKLKA
ParentalDKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK
.KA.KKLLAD.A.A.RSKT.EA.K..EE.LQAKKE.IIKT...EEETKK
RetrocopyNKAGKKLLAD*AKAYRSKTREAPKCLEEWLQAKKEGIIKT-AQEEETKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_1149 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 104 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000085204 retrocopies
Equus caballus ENSECAG000000250806 retrocopies
Myotis lucifugus ENSMLUG00000012555 11 retrocopies
Macaca mulatta ENSMMUG000000042352 retrocopies
Nomascus leucogenys ENSNLEG0000000074819 retrocopies
Pongo abelii ENSPPYG0000000849220 retrocopies
Rattus norvegicus ENSRNOG0000000474137 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000111205 retrocopies



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