Parental gene:

Rpl19, ENSRNOG00000004741

Aliases:None
Description:60S ribosomal protein L19 [Source:UniProtKB/Swiss-Prot;Acc:P84100]
Organism:Rat (Rattus norvegicus)
Coordinates:10:85767183..85774814(+)


>ENSRNOG00000004741
ATGAGTATGCTTAGGCTACAGAAGAGGCTTGCCTCTAGCGTCCTCCGCTGTGGTAAAAAGAAGGTGTGGTTGGACCCCAA
TGAAACCAACGAAATCGCCAATGCCAACTCTCGTCAACAGATCAGGAAGCTGATCAAAGATGGCCTGATCATCCGGAAGC
CTGTGACTGTCCATTCCCGGGCTCGATGCCGGAAGAACACCTTGGCCCGACGGAAGGGCAGGCATATGGGCATAGGGAAG
AGGAAGGGTACTGCCAACGCTCGGATGCCCGAGAAGGTGACCTGGATGCGAAGGATGAGGATCCTGCGCCGGCTTCTCAG
GAGATACCGGGAATCTAAGAAGATTGACCGTCATATGTATCACAGCCTGTACCTGAAGGTCAAAGGGAATGTGTTCAAAA
ACAAGCGGATTCTCATGGAGCACATCCACAAACTGAAGGCAGACAAGGCCCGCAAGAAGCTACTGGCTGACCAGGCTGAG
GCTCGCAGGTCTAAGACCAAGGAAGCACGAAAGCGCCGGGAGGAGCGCCTCCAAGCCAAGAAGGAGGAGATCATCAAGAC
TCTGTCCAAGGAGGAAGAGACCAAGAAATGA

Library Parental gene expression (RPM)
SRP017611_liver 120 .76 RPM
SRP017611_kidney 204 .25 RPM
SRP017611_brain 137 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004121 ortholog_one2one 5 retrogenes
retro_amel_1195, retro_amel_1663, retro_amel_451, retro_amel_531, retro_amel_889,
Bos taurus ENSBTAG00000002060 possible_ortholog 5 retrogenes
retro_btau_1241, retro_btau_1254, retro_btau_1371, retro_btau_1480, retro_btau_761,
Canis familiaris ENSCAFG00000016493 possible_ortholog 14 retrogenes
retro_cfam_1011, retro_cfam_1647, retro_cfam_1767, retro_cfam_1799, retro_cfam_1892, retro_cfam_2082, retro_cfam_2129, retro_cfam_328, retro_cfam_357, retro_cfam_486, retro_cfam_851, retro_cfam_909, retro_cfam_932, retro_cfam_940,
Choloepus hoffmanni ENSCHOG00000006023 possible_ortholog 7 retrogenes
retro_chof_1041, retro_chof_1065, retro_chof_1135, retro_chof_1930, retro_chof_2567, retro_chof_338, retro_chof_993,
Callithrix jacchus ENSCJAG00000008520 possible_ortholog 4 retrogenes
retro_cjac_131, retro_cjac_220, retro_cjac_32, retro_cjac_64,
Dasypus novemcinctus ENSDNOG00000019742 possible_ortholog 7 retrogenes
retro_dnov_1478, retro_dnov_1897, retro_dnov_2, retro_dnov_2170, retro_dnov_2431, retro_dnov_691, retro_dnov_720,
Dipodomys ordii ENSDORG00000004330 ortholog_one2one 1 retrogene
retro_dord_105,
Equus caballus ENSECAG00000025080 possible_ortholog 6 retrogenes
retro_ecab_104, retro_ecab_319, retro_ecab_351, retro_ecab_456, retro_ecab_497, retro_ecab_905,
Homo sapiens ENSG00000108298 ortholog_one2one 21 retrogenes
retro_hsap_1085, retro_hsap_1802, retro_hsap_2072, retro_hsap_2157, retro_hsap_2209, retro_hsap_2406, retro_hsap_2651, retro_hsap_2679, retro_hsap_2850, retro_hsap_3012, retro_hsap_3155, retro_hsap_3274, retro_hsap_3401, retro_hsap_3885, retro_hsap_3933, retro_hsap_399, retro_hsap_3991, retro_hsap_4219, retro_hsap_4680, retro_hsap_4774, retro_hsap_739,
Loxodonta africana ENSLAFG00000018257 possible_ortholog 3 retrogenes
retro_lafr_1045, retro_lafr_479, retro_lafr_88,
Macropus eugenii ENSMEUG00000013900 possible_ortholog 10 retrogenes
retro_meug_1047, retro_meug_1201, retro_meug_1226, retro_meug_1256, retro_meug_1262, retro_meug_1486, retro_meug_1878, retro_meug_2108, retro_meug_2155, retro_meug_82,
Microcebus murinus ENSMICG00000002663 possible_ortholog 5 retrogenes
retro_mmur_1213, retro_mmur_231, retro_mmur_469, retro_mmur_520, retro_mmur_678,
Myotis lucifugus ENSMLUG00000012555 possible_ortholog 11 retrogenes
retro_mluc_1149, retro_mluc_1473, retro_mluc_1694, retro_mluc_2032, retro_mluc_2034, retro_mluc_2398, retro_mluc_2400, retro_mluc_2616, retro_mluc_573, retro_mluc_887, retro_mluc_890,
Macaca mulatta ENSMMUG00000004235 possible_ortholog 2 retrogenes
retro_mmul_283, retro_mmul_63,
Monodelphis domestica ENSMODG00000012693 possible_ortholog 2 retrogenes
retro_mdom_53, retro_mdom_750,
Mustela putorius furo ENSMPUG00000015041 possible_ortholog 5 retrogenes
retro_mputfur_1221, retro_mputfur_1248, retro_mputfur_1479, retro_mputfur_357, retro_mputfur_688,
Mus musculus ENSMUSG00000017404 ortholog_one2one 25 retrogenes
retro_mmus_1174, retro_mmus_1235, retro_mmus_1248, retro_mmus_1273, retro_mmus_1323, retro_mmus_1397, retro_mmus_1591, retro_mmus_1614, retro_mmus_1699, retro_mmus_1700, retro_mmus_1877, retro_mmus_1885, retro_mmus_1964, retro_mmus_2301, retro_mmus_2688, retro_mmus_2749, retro_mmus_2967, retro_mmus_3110, retro_mmus_3187, retro_mmus_3310, retro_mmus_341, retro_mmus_3413, retro_mmus_507, retro_mmus_571, retro_mmus_600,
Nomascus leucogenys ENSNLEG00000000748 ortholog_one2one 19 retrogenes
retro_nleu_1182, retro_nleu_1570, retro_nleu_1602, retro_nleu_1620, retro_nleu_1889, retro_nleu_2171, retro_nleu_2236, retro_nleu_2284, retro_nleu_2335, retro_nleu_2430, retro_nleu_2446, retro_nleu_2538, retro_nleu_2695, retro_nleu_2702, retro_nleu_2735, retro_nleu_3116, retro_nleu_479, retro_nleu_540, retro_nleu_656,
Ochotona princeps ENSOPRG00000007092 possible_ortholog 2 retrogenes
retro_opri_1220, retro_opri_987,
Procavia capensis ENSPCAG00000015228 possible_ortholog 1 retrogene
retro_pcap_141,
Pongo abelii ENSPPYG00000008492 possible_ortholog 20 retrogenes
retro_pabe_1546, retro_pabe_1687, retro_pabe_1709, retro_pabe_1815, retro_pabe_2177, retro_pabe_2300, retro_pabe_2320, retro_pabe_2496, retro_pabe_2625, retro_pabe_2799, retro_pabe_2800, retro_pabe_3166, retro_pabe_3278, retro_pabe_3299, retro_pabe_3513, retro_pabe_3635, retro_pabe_3829, retro_pabe_4, retro_pabe_973, retro_pabe_980,
Pan troglodytes ENSPTRG00000009086 possible_ortholog 22 retrogenes
retro_ptro_1180, retro_ptro_1385, retro_ptro_1642, retro_ptro_1676, retro_ptro_1786, retro_ptro_1806, retro_ptro_1930, retro_ptro_2036, retro_ptro_2214, retro_ptro_2279, retro_ptro_2311, retro_ptro_2645, retro_ptro_2709, retro_ptro_2865, retro_ptro_2998, retro_ptro_305, retro_ptro_3109, retro_ptro_3179, retro_ptro_467, retro_ptro_525, retro_ptro_673, retro_ptro_737,
Pteropus vampyrus ENSPVAG00000008498 ortholog_one2one 9 retrogenes
retro_pvam_1191, retro_pvam_1332, retro_pvam_183, retro_pvam_244, retro_pvam_468, retro_pvam_792, retro_pvam_914, retro_pvam_918, retro_pvam_950,
Rattus norvegicus ENSRNOG00000049404 within_species_paralog 12 retrogenes
retro_rnor_1096, retro_rnor_1097, retro_rnor_1553, retro_rnor_1554, retro_rnor_1555, retro_rnor_1810, retro_rnor_202, retro_rnor_2054, retro_rnor_2530, retro_rnor_466, retro_rnor_511, retro_rnor_876,
Sarcophilus harrisii ENSSHAG00000016482 ortholog_one2one 4 retrogenes
retro_shar_159, retro_shar_287, retro_shar_317, retro_shar_415,
Sus scrofa ENSSSCG00000017509 ortholog_one2one 3 retrogenes
retro_sscr_1108, retro_sscr_398, retro_sscr_913,
Ictidomys tridecemlineatus ENSSTOG00000011120 possible_ortholog 5 retrogenes
retro_itri_1174, retro_itri_1180, retro_itri_1330, retro_itri_178, retro_itri_200,
Tupaia belangeri ENSTBEG00000008077 possible_ortholog 31 retrogenes
retro_tbel_1024, retro_tbel_1150, retro_tbel_1200, retro_tbel_1248, retro_tbel_1507, retro_tbel_1620, retro_tbel_173, retro_tbel_1752, retro_tbel_1791, retro_tbel_1826, retro_tbel_1942, retro_tbel_199, retro_tbel_2166, retro_tbel_2529, retro_tbel_2558, retro_tbel_2687, retro_tbel_2751, retro_tbel_2855, retro_tbel_3256, retro_tbel_3347, retro_tbel_3493, retro_tbel_3758, retro_tbel_4501, retro_tbel_4606, retro_tbel_4631, retro_tbel_759, retro_tbel_799, retro_tbel_835, retro_tbel_867, retro_tbel_957, retro_tbel_988,
Tarsius syrichta ENSTSYG00000008698 possible_ortholog 10 retrogenes
retro_tsyr_1164, retro_tsyr_1267, retro_tsyr_1310, retro_tsyr_1330, retro_tsyr_1770, retro_tsyr_1916, retro_tsyr_540, retro_tsyr_713, retro_tsyr_782, retro_tsyr_93,
Tursiops truncatus ENSTTRG00000006687 possible_ortholog 4 retrogenes
retro_ttru_1131, retro_ttru_1132, retro_ttru_1389, retro_ttru_1804,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_208 80.39 77.55
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2. retro_rnor_326 87.24 100.00
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3. retro_rnor_426 75.34 73.47
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4. retro_rnor_434 70.22 89.80
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5. retro_rnor_464 92.86 100.00
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6. retro_rnor_465 92.86 100.00
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7. retro_rnor_829 77.23 100.00
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8. retro_rnor_1029 93.09 95.92
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9. retro_rnor_1039 79.14 69.39
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10. retro_rnor_1295 73.60 62.76
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11. retro_rnor_1338 73.58 52.04
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12. retro_rnor_1405 76.79 56.63
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13. retro_rnor_1440 70.79 89.29
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14. retro_rnor_1449 82.04 84.18
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15. retro_rnor_1478 76.80 62.24
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16. retro_rnor_1512 78.17 100.00
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17. retro_rnor_1525 74.42 65.82
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18. retro_rnor_1558 72.82 52.55
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19. retro_rnor_1577 90.86 100.00
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20. retro_rnor_1765 56.25 64.80
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21. retro_rnor_1766 56.25 64.80
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22. retro_rnor_1795 80.70 85.71
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23. retro_rnor_1814 57.39 57.14
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24. retro_rnor_1860 81.87 87.24
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25. retro_rnor_1885 55.77 51.53
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26. retro_rnor_1905 88.89 77.55
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27. retro_rnor_1907 85.71 84.69
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28. retro_rnor_1970 91.10 97.45
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29. retro_rnor_1981 60.13 77.55
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30. retro_rnor_2169 81.22 100.00
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31. retro_rnor_2522 77.59 58.16
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32. retro_rnor_2536 77.04 68.88
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33. retro_rnor_2708 85.28 100.00
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34. retro_rnor_2773 79.69 96.94
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35. retro_rnor_2783 86.96 58.67
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36. retro_rnor_2921 93.38 77.04
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37. retro_rnor_2943 89.29 100.00
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Download FASTA sequences of all ENSRNOG00000004741 retrocopies