RetrogeneDB ID: | retro_ecab_104 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 4:94035510..94036008(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000003585 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000025080 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 99.4 % |
Parental protein coverage: | 85.13 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRK |
MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRK | |
Retrocopy | MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRK |
Parental | GRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHI |
GRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKID.HMYHSLYLKVKGNVFKNKRILMEHI | |
Retrocopy | GRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDHHMYHSLYLKVKGNVFKNKRILMEHI |
Parental | HKLKADKARKKLLADQAEARRSKTKE |
HKLKADKARKKLLADQAEARRSKTKE | |
Retrocopy | HKLKADKARKKLLADQAEARRSKTKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 4 .31 RPM | 0 .06 RPM |
SRP021940_cerebellum | 2 .39 RPM | 0 .10 RPM |
SRP021940_embryo | 4 .07 RPM | 0 .43 RPM |
SRP021940_placental_villous | 1 .59 RPM | 0 .29 RPM |
SRP021940_synovial_membrane | 2 .39 RPM | 0 .44 RPM |
SRP021940_testis | 1 .41 RPM | 0 .13 RPM |