Parental gene:

ENSCJAG00000008520

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:111059322..111063337(+)


>ENSCJAG00000008520
ATGAGTATGCTCAGGCTTCAGAAGAGGCTCGCCTCTAGTGTCCTCCGCTGTGGCAAGAAGAAGGTCTGGTTGGATCCGAA
TGAGACCAATGAAATCGCCAATGCTAACTCGCGTCAGCAGATCCGGAAGCTGATCAAAGATGGGCTGATCATCCGAAAGC
CTGTGACGGTCCATTCCCGGGCTCGCTGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACATGGGCATAGGTAAG
CGTAAGGGTACAGCCAATGCCCGAATGCCAGAGAAGGTCACGTGGATGAGGAGAATGAGGATTCTGCGCCGGCTGCTCAG
AAGATACCGGGAATCTAAGAAAATTGATCGCCACATGTATCACAGCCTGTACCTGAAGGTGAAGGGGAATGTGTTCAAAA
ACAAGCGGATTCTCATGGAACACATCCACAAGCTGAAGGCAGACAAGGCCCGCAAGAAGCTCCTGGCTGACCAGGCTGAG
GCCCGCAGGTCTAAGACCAAGGAAGCACGAAAGCGCCGTGAAGAGCGCCTCCAGGCCAAAAAGGAGGAGATCATCAAAAC
TTTGTCCAAGGAGGAAGAGACCAAGAAATAA

Library Parental gene expression (RPM)
SRP051959_spleen 213 .30 RPM
SRP051959_skeletal_muscle 157 .36 RPM
SRP051959_lymph_node 248 .99 RPM
SRP051959_lung 153 .06 RPM
SRP051959_liver 160 .44 RPM
SRP051959_kidney 133 .96 RPM
SRP051959_heart 116 .94 RPM
SRP051959_colon 109 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004121 possible_ortholog 5 retrogenes
Bos taurus ENSBTAG00000002060 possible_ortholog 5 retrogenes
Canis familiaris ENSCAFG00000016493 ortholog_one2many 14 retrogenes
Choloepus hoffmanni ENSCHOG00000006023 ortholog_one2many 7 retrogenes
Dasypus novemcinctus ENSDNOG00000019742 possible_ortholog 7 retrogenes
Dipodomys ordii ENSDORG00000004330 possible_ortholog 1 retrogene
Equus caballus ENSECAG00000025080 possible_ortholog 6 retrogenes
Homo sapiens ENSG00000108298 possible_ortholog 21 retrogenes
Loxodonta africana ENSLAFG00000018257 possible_ortholog 3 retrogenes
Macropus eugenii ENSMEUG00000013900 ortholog_one2many 10 retrogenes
Microcebus murinus ENSMICG00000002663 possible_ortholog 5 retrogenes
Myotis lucifugus ENSMLUG00000012555 possible_ortholog 11 retrogenes
Macaca mulatta ENSMMUG00000004235 possible_ortholog 2 retrogenes
Monodelphis domestica ENSMODG00000012693 possible_ortholog 2 retrogenes
Mustela putorius furo ENSMPUG00000015041 ortholog_one2many 5 retrogenes
Mus musculus ENSMUSG00000017404 possible_ortholog 25 retrogenes
Nomascus leucogenys ENSNLEG00000000748 possible_ortholog 19 retrogenes
Ochotona princeps ENSOPRG00000007092 possible_ortholog 2 retrogenes
Procavia capensis ENSPCAG00000015228 possible_ortholog 1 retrogene
Pongo abelii ENSPPYG00000008492 ortholog_one2many 20 retrogenes
Pan troglodytes ENSPTRG00000009086 possible_ortholog 22 retrogenes
Pteropus vampyrus ENSPVAG00000008498 possible_ortholog 9 retrogenes
Rattus norvegicus ENSRNOG00000004741 possible_ortholog 37 retrogenes
Sarcophilus harrisii ENSSHAG00000016482 possible_ortholog 4 retrogenes
Sus scrofa ENSSSCG00000017509 possible_ortholog 3 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000011120 possible_ortholog 5 retrogenes
Tupaia belangeri ENSTBEG00000008077 possible_ortholog 31 retrogenes
Tarsius syrichta ENSTSYG00000008698 possible_ortholog 10 retrogenes
Tursiops truncatus ENSTTRG00000006687 ortholog_one2many 4 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_32 99.49 100.00
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2. retro_cjac_64 98.47 100.00
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3. retro_cjac_131 99.49 100.00
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4. retro_cjac_220 98.98 100.00
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Download FASTA sequences of all ENSCJAG00000008520 retrocopies