RetrogeneDB ID: | retro_ecab_905 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 6:48991030..48991492(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000012017 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000025080 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.88 % |
Parental protein coverage: | 80.51 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | QIRKLIK-DGLIIRKPVTVHSRARCRKNTLA-RRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLR |
QI.KLI...GL.I.KPVTVHS.A.CRKNTLA...KGRHMG.GK.K.TANA.MPEK..W.R..RIL..L.. | |
Retrocopy | QI*KLIE<NGLVIQKPVTVHSQAQCRKNTLA<HGKGRHMGTGKQKRTANAQMPEK--WVRMIRILHWLHG |
Parental | RYRESKKIDRHMYHSLYLKVK-GNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREER |
RYRESKK.D...YHSLYLK.K.GN.FKNKR.LMEHI.KLKA.KA...LL.D...A..SKTK..R....E. | |
Retrocopy | RYRESKKNDYCVYHSLYLKGK<GNTFKNKRFLMEHIPKLKAGKASGNLLDDRDKACISKTKKTRTCCKEQ |
Parental | LQAKKEEIIKTLSKEEETKK |
LQAKKEEII.TLS.EEE.KK | |
Retrocopy | LQAKKEEIINTLSEEEEPKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .06 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .10 RPM |
SRP021940_embryo | 0 .00 RPM | 0 .43 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .29 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .44 RPM |
SRP021940_testis | 0 .00 RPM | 0 .13 RPM |