RetrogeneDB ID: | retro_ecab_351 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 15:71132625..71133210(-) | ||
Located in intron of: | ENSECAG00000017819 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000025080 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 99.49 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARR |
SMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARR | |
Retrocopy | SMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARR |
Parental | KGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEH |
KGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNK.ILMEH | |
Retrocopy | KGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKWILMEH |
Parental | IHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
IHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK | |
Retrocopy | IHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 1 .06 RPM | 0 .06 RPM |
SRP021940_cerebellum | 0 .36 RPM | 0 .10 RPM |
SRP021940_embryo | 0 .36 RPM | 0 .43 RPM |
SRP021940_placental_villous | 0 .48 RPM | 0 .29 RPM |
SRP021940_synovial_membrane | 0 .47 RPM | 0 .44 RPM |
SRP021940_testis | 0 .38 RPM | 0 .13 RPM |