RetrogeneDB ID: | retro_mmul_1228 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 16:34033322..34033641(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4293 | ||
Ensembl ID: | ENSMMUG00000016061 | ||
Aliases: | None | ||
Description: | signal recognition particle 14kDa (homologous Alu RNA binding protein) [Source:RefSeq peptide;Acc:NP_001252848] |
Percent Identity: | 74.55 % |
Parental protein coverage: | 79.56 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRATDGKKKISTVV |
..LESEQFL.ELTRLFQKC...GS.YITLKK..GRTKP.PKKG.VEGFEP.D.KCLLRA..GKKK.STVV | |
Retrocopy | MMLESEQFLMELTRLFQKCWRLGSIYITLKK*SGRTKPVPKKGSVEGFEPSD-KCLLRAIYGKKKVSTVV |
Parental | SSKEVNKFQMAYSNLLRANMDGLK-KRDKKNKTKKTKAAA |
SSK.VNKFQMAYS.LL.ANMDGLK.....K.K..KTKA.A | |
Retrocopy | SSKQVNKFQMAYSDLLSANMDGLK>DKKNKSK--KTKAVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 48 .63 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 70 .68 RPM |
SRP007412_cerebellum | 0 .00 RPM | 31 .00 RPM |
SRP007412_heart | 0 .12 RPM | 55 .29 RPM |
SRP007412_kidney | 0 .12 RPM | 52 .35 RPM |
SRP007412_liver | 0 .04 RPM | 34 .68 RPM |
SRP007412_testis | 0 .04 RPM | 52 .70 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1765 |
Pan troglodytes | retro_ptro_1181 |
Pongo abelii | retro_pabe_1534 |