RetrogeneDB ID: | retro_mmul_1349 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 18:37374779..37376070(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3111 | ||
Ensembl ID: | ENSMMUG00000002163 | ||
Aliases: | None | ||
Description: | keratin, type II cytoskeletal 8 [Source:RefSeq peptide;Acc:NP_001247474] |
Percent Identity: | 79.05 % |
Parental protein coverage: | 90.06 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 7 |
Parental | MSIRVTQKSYKVSTSGPRAFS-SRSYTSGPGA-RISSSSFSRVGSSSFRGGLGGGYG-GASGM-GGITAV |
.SIRVTQK.YKVSTSGP.AFS...SYTSGPGA..ISS.SFS.VGSSSF.GGLG.GYG..AS.M.G.ITAV | |
Retrocopy | ISIRVTQKFYKVSTSGPLAFS>EHSYTSGPGA<PISSLSFS*VGSSSFTGGLGEGYG<PASSM<GTITAV |
Parental | TVNQSLLSPLNLEV-DPNIQAVRTQEK-EQIKTLNNKFASFIDKVRFLEQQNKMLETKWSLLQQQKTARS |
.VNQSLL...NLEV..P.........K.EQIKTLNN.FASFI.KV..LEQQNKMLETKWSLLQQQK...S | |
Retrocopy | MVNQSLL---NLEVGTPTTRPCAPRRK<EQIKTLNNQFASFINKVWLLEQQNKMLETKWSLLQQQKMVQS |
Parental | NMDNMFESYINNLRRQLETLGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAY |
N.D.M..SYINNL..QLETL..E..KLEAELGNMQGLVE.FKNKYED.I...TE.ENEFV.IKKDVDEAY | |
Retrocopy | NVDDMLQSYINNLWWQLETLA*E--KLEAELGNMQGLVEHFKNKYEDDISNPTEIENEFVPIKKDVDEAY |
Parental | MNKVELESRLEGLTDEINFLRQLYEEEIRELQSQISDT-SVVLSMDNSRSLDMDSIIAEVKAQYEEIAN- |
MNKVEL..RLEGLT.EINFLRQLYEEEI.ELQ.QISD...VVLSMDNS.SLDMDSIIAEVK.QY.EIAN. | |
Retrocopy | MNKVELKFRLEGLTEEINFLRQLYEEEIQELQPQISDI<TVVLSMDNSCSLDMDSIIAEVKVQYKEIAN< |
Parental | RSRAEAESMYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRASLEAAIADAEQ-R |
RS.AEAESMYQIK.EELQ.LAGKHGDDL.RTKTEI.EMNRN.S.LQAE.EGLKGQRA..EAAIADAE... | |
Retrocopy | RSGAEAESMYQIKHEELQTLAGKHGDDLHRTKTEIFEMNRNMSQLQAETEGLKGQRAFPEAAIADAERLP |
Parental | GELAIKDANAKLSELEAALQRAKQDMARQLREYQELMNVKLALDIEIATYRKLLEGEESRLESGMQNMSI |
GEL..KDAN..LSELEAALQ.AKQDMA.QLREYQ.LMNVKLALDIEIATY.KLLEGEES.LESGMQNMSI | |
Retrocopy | GELVVKDANTTLSELEAALQPAKQDMAQQLREYQALMNVKLALDIEIATYTKLLEGEESQLESGMQNMSI |
Parental | HTKTTSGYAGGLSSAYGGLTSPGL |
.TKTTSG.AGGLSSAYGGLTSPGL | |
Retrocopy | YTKTTSG*AGGLSSAYGGLTSPGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .24 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .06 RPM |
SRP007412_heart | 0 .00 RPM | 8 .24 RPM |
SRP007412_kidney | 0 .00 RPM | 22 .18 RPM |
SRP007412_liver | 0 .00 RPM | 33 .41 RPM |
SRP007412_testis | 0 .00 RPM | 0 .94 RPM |