RetrogeneDB ID: | retro_ogar_2177 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873599.1:7066742..7067864(+) | ||
Located in intron of: | ENSOGAG00000003113 | ||
Retrocopyinformation | Ensembl ID: | ENSOGAG00000028324 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOGAG00000011740 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.97 % |
Parental protein coverage: | 77.8 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MSIRVTQKSYKVSTSAPRAFSSRSYSSGPGARISSSSFSRVGSGSFRSGLSTGLGLGGGYAGAGGMGGIT |
MSIRVTQKSYKVSTSAPRAFSSRSYSSGP.ARISSS.FS.V.S....S....GLG.G.G....GG..GIT | |
Retrocopy | MSIRVTQKSYKVSTSAPRAFSSRSYSSGPVARISSSTFSWVDS----SSFRSGLGTGQGCRYGGG--GIT |
Parental | AVTVNQSLLSPLNLEVDPNIQAVRTQEKEEIKTLNNKFASFIDKVRFLEQQNKMLETKWNLLQQQKTARS |
A.TVNQSLLSPLNLEVDPNIQ.V.TQEKE.IK.LNNKFASF.DKVRFLEQQNK.LETKW.LLQQQKTARS | |
Retrocopy | AITVNQSLLSPLNLEVDPNIQVVGTQEKEAIKILNNKFASF-DKVRFLEQQNKRLETKWDLLQQQKTARS |
Parental | NMDSMFESYINNLRRQLDTLGQEKLKLEAELGNMQGLVEDFKNKYEEEINK-RTEMENEFVLIKKDVDEA |
NMDSMFESYINNL.RQLDTLGQEKLKLEAELGNMQGLVEDFKNKYEEEINK..T.MENEFVLIKKDVDEA | |
Retrocopy | NMDSMFESYINNLQRQLDTLGQEKLKLEAELGNMQGLVEDFKNKYEEEINK<ATDMENEFVLIKKDVDEA |
Parental | -YMNKVELESRLDGLTDEI-NFLRQLYEEEIRELQSQISDTSVVLSMDNSRSLDMDSIIAEVRAQYEEIA |
.YMN.VELESRLDGLTDEI..FLRQLYE.EI.ELQSQISDTSVVLSMDNS.SLDMDSIIAEVRAQYEEIA | |
Retrocopy | <YMNQVELESRLDGLTDEI<HFLRQLYEKEICELQSQISDTSVVLSMDNSYSLDMDSIIAEVRAQYEEIA |
Parental | NRSRAEAESVYLTKYEELQVQAGKHGDDLRRTKTEISDMNRNISRLQNEIEALKGQRAALEASIADAEQR |
.RS.A.AESVY.TKY.ELQVQAGK.GDDLRRTK.E..D.NRNISRLQNEI.ALKGQR.AL.ASIADAEQR | |
Retrocopy | SRSWAVAESVYQTKYKELQVQAGKYGDDLRRTKMETFDKNRNISRLQNEI*ALKGQRVALDASIADAEQR |
Parental | GELALKDANAKLAQLEAALRQAKQDMAQQLREYQD |
GELALKDANAKLAQLEAAL.QAKQDMAQQL.EYQD | |
Retrocopy | GELALKDANAKLAQLEAALCQAKQDMAQQLCEYQD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |