RetrogeneDB ID: | retro_pvam_1299 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_57540:587..1469(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT8 | ||
Ensembl ID: | ENSPVAG00000009360 | ||
Aliases: | None | ||
Description: | keratin 8 [Source:HGNC Symbol;Acc:6446] |
Percent Identity: | 79.05 % |
Parental protein coverage: | 61.2 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LGGGYGGAGGAGNITAVQVNQSLLSPLKLEVDPNIQAVRTQEKEQIKTLNNKFANFIDKVRSLEQQNKIL |
L.GGYGGAG..G.ITAVQVNQSLLSPLKLEVD.NIQA..T.EKEQIKTLNNKF..FI.KV.SLE.QNKIL | |
Retrocopy | LAGGYGGAGDMGSITAVQVNQSLLSPLKLEVDLNIQAMHT*EKEQIKTLNNKFTSFINKVWSLEPQNKIL |
Parental | ETKWNFLQQQKTIRSNMDNMFESYINNLRRQLDTLAQEKLRLEAECGNMQGLVEDLKNKYEDEINKRTEM |
ETKWN.LQQQKT.RSNMD.MFESYINN.R.QLDTLAQEKLR..AE.GNMQGLVEDL..KY.DEINK.T.M | |
Retrocopy | ETKWNLLQQQKTTRSNMDIMFESYINNFRWQLDTLAQEKLRPKAEFGNMQGLVEDL--KYKDEINKHTKM |
Parental | ENEFVLIKKDVDEAYMNKVELESRLEGLTDEINFYRQLYEEEIRELQAQISDTSVVLSMDNNRSLDLDGI |
ENEFVLI.KD..E.Y.NKV..ES.L.GLTDEINFYRQLYEEEI...QAQIS...VVL.MDNNRSLDLDGI | |
Retrocopy | ENEFVLIRKDTEEVYTNKVQRESCLDGLTDEINFYRQLYEEEICKMQAQISNMFVVLFMDNNRSLDLDGI |
Parental | IAEVKAQYEDIANRSRAEAETMYQIK-GDLSSLTGKHGDDLRRTKTEISEMNRNISRLQAEIEALKGQRA |
...VK..YE.IAN.SRAEAETMYQIK...L..L.GKHGDDL...KTEISEMN.NISRLQAEIEA.KGQ.A | |
Retrocopy | TVKVKGKYEEIANCSRAEAETMYQIKYEELQLLAGKHGDDLCHMKTEISEMNWNISRLQAEIEAFKGQKA |
Parental | SLEAAIADAEQRGELA |
SLEAA.ADAEQRGELA | |
Retrocopy | SLEAAKADAEQRGELA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |