RetrogeneDB ID: | retro_mmul_145 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 16:38119795..38121808(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000014427 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KIF2A | ||
Ensembl ID: | ENSMMUG00000000399 | ||
Aliases: | None | ||
Description: | kinesin-like protein KIF2A [Source:RefSeq peptide;Acc:NP_001253787] |
Percent Identity: | 74.69 % |
Parental protein coverage: | 58.75 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RRKSNCVKEVEKLQEKREKRRLQQQELREKRAQDVDATNPNYEIMCMIRDFRGSLDYRPLTTADPIDEHR |
..KS.C..E.EK.Q..REKRR..QQE.R..RA.DV...NPNYEIM.MI...R..LD........P..EHR | |
Retrocopy | QKKSPCLQEIEKVQKQREKRRRLQQEIRARRALDVNTRNPNYEIMHMIEEYRRHLDSSKISVLEPRQEHR |
Parental | ICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFT |
ICVCVRKRPLN..ET..KDLD.IT.PS..VVMVHE.KQKVDLTRYLENQTF.FD.AFDD.A.NE.VY.FT | |
Retrocopy | ICVCVRKRPLNQRETTLKDLDIITVPSDNVVMVHESKQKVDLTRYLENQTFCFDHAFDDKASNELVYQFT |
Parental | ARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAARDVFLMLKKPNYKKLELQVY |
A.PLVE.IF..GMATCFAYGQTGSGKT.TMGGDF.G..QD.SKGIYAL.A.DVFL.L....Y.KL.L.VY | |
Retrocopy | AQPLVESIFRKGMATCFAYGQTGSGKTYTMGGDFAGRAQDHSKGIYALVAQDVFLLLRNSIYEKLDLKVY |
Parental | ATFFEIYSGKVFDLLNRKTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSS |
.TFFEIY.GKV.DLLN.K.KL.VLEDG.QQ.QVVGLQE.EV.CVE.VL.L...GNSCRTS.QTS.NAHSS | |
Retrocopy | GTFFEIYGGKVYDLLNWKKKLQVLEDGNQQIQVVGLQEQEVCCVEEVLNLVELGNSCRTSRQTSVNAHSS |
Parental | RSHAVFQIILRRKGKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTP |
RSHAVFQIIL...GKLHGKFSL.DLAGNERGADT..A.R...LEGAEINKSLLALKECI.ALG.NKPHTP | |
Retrocopy | RSHAVFQIILKSGGKLHGKFSLVDLAGNERGADTTKASRKRQLEGAEINKSLLALKECILALGQNKPHTP |
Parental | FRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKELTVD |
FRASKLTQVLRDSFIG.NS.TCMIATISPGM.SCENTLNTLRYANRVKEL..D | |
Retrocopy | FRASKLTQVLRDSFIGQNSSTCMIATISPGMTSCENTLNTLRYANRVKELNAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 83 .37 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 57 .67 RPM |
SRP007412_cerebellum | 0 .00 RPM | 57 .02 RPM |
SRP007412_heart | 0 .06 RPM | 8 .60 RPM |
SRP007412_kidney | 0 .12 RPM | 15 .38 RPM |
SRP007412_liver | 0 .00 RPM | 4 .43 RPM |
SRP007412_testis | 588 .92 RPM | 87 .83 RPM |