Parental gene:

Kif2a, ENSRNOG00000014000

Aliases:Kif2a, Kif2
Description:kinesin-like protein KIF2A [Source:RefSeq peptide;Acc:NP_445828]
Organism:Rat (Rattus norvegicus)
Coordinates:2:57241540..57302938(-)


>ENSRNOG00000014000
ATGGCAACGGCTAACTTCGGCAAGATCCAGATCGGGATTTACGTGGAAATCAAGCGCAGCGATGGCCGAATACACCAGGC
AATGGTGACATCATTAAATGAAGATAATGAAAGTGTCACAGTCGAGTGGATAGAAAATGGAGACACAAAAGGAAAAGAGA
TTGACTTGGAAAGCATCTTTTCACTTAACCCTGACCTTGTACCTGATGAAGACATTGAGCCAAGTCCAGAAATACCTCCA
CCCTCCTCATCCTCAAAAGTAAACAAAATTGTAAAGAACCGACGGACTGTGGCATCTATTAAGAACGACCCTCCCCCCAG
AGATAATAGAGTGGTTGGTTCAGCACGCGCACGGCCTAGTCAACTTCCTGAGCAGTCATCTTCTGCACAACAGAATGGTA
GCGTTTCAGATATATCTCCAGTTCAAGCTGCAAAAAAGGAGTTTGGACCTCCTTCACGTAGAAAATCTAATTGTGTGAAA
GAAGTAGAAAAATTGCAAGAAAAACGAGAAAAAAGAAGATTGCAACAGCAAGAACTTAGAGAAAAAAGAGCCCAGGATGT
CGATGCCACAAATCCAAATTACGAGATTATGTGTATGATCAGAGACTTCAGAGGGAGCTTGGACTATAGACCCCTCACAA
CAGCTGATCCTATTGATGAACATAGGATATGTGTTTGTGTAAGAAAACGACCACTCAATAAAAAAGAAACTCAGATGAAA
GATCTTGATGTCATCACAATCCCTAGTAAAGATGTTGTGATGGTTCATGAACCCAAACAGAAAGTAGACTTAACAAGGTA
CTTAGAAAACCAGACATTTCGTTTTGATTATGCCTTTGATGACTCAGCTCCTAATGAAATGGTTTACAGATTTACTGCCA
GGCCACTGGTGGAAACAATAGAAAGGGGCATGGCTACCTGCTTTGCTTATGGGCAGACTGGAAGTGGGAAAACTCACACT
ATGGGTGGTGACTTTTCAGGAAAGAACCAGGATTGCTCTAAGGGAATTTATGCATTAGCAGCTCGAGATGTGTTTTTAAT
GCTGAAGAAGCCAAACTATAAGAAACTAGAACTCCAAGTATATGCAACATTTTTTGAAATTTATAGTGGAAAGGTGTTTG
ACTTACTAAATAGGAAAACAAAGTTAAGAGTCCTAGAGGATGGAAAGCAGCAGGTGCAAGTGGTAGGGCTGCAGGAACGG
GAGGTCAAGTGTGTGGAAGACGTGCTGAAGCTCATCGACATCGGCAACAGCTGCAGAACATCTGGTCAGACATCTGCAAA
TGCACACTCATCTCGGAGCCATGCAGTGTTTCAGATCATTCTTAGGAGGAAGGGGAAACTACATGGTAAATTTTCTCTCA
TCGACCTGGCTGGGAACGAAAGAGGAGCTGATACGTCCAGTGCAGACAGGCAAACCAGGCTTGAAGGTGCTGAAATTAAT
AAAAGCCTTTTAGCACTCAAGGAGTGCATCCGAGCCTTAGGTAGAAATAAACCCCACACTCCTTTCCGAGCAAGTAAACT
CACTCAGGTGTTGAGAGATTCCTTCATAGGTGAGAATTCTCGCACTTGCATGATTGCCACGATCTCTCCAGGAATGGCAT
CCTGTGAAAACACTCTTAATACATTAAGATATGCAAATAGAGTAAAGGAGTTTGGAATTAGTCCTTCAGACATTCCCTTC
TCCCAGGGTAGTGGCAGTCGCCCTGATCTCTCTCCTTCTTACGATTATGACGACTTTTCTCCTTCGATTACCAGGGTGAA
AGAACTGACTGTGGATCCAACTGCTGCTGGTGATGTCCGTCCAATAATGCACCATCCACCAAGCCAGATTGACGACCTAG
AGACACAGTGGGGGGTGGGGAGTTCCCCTCAGAGAGATGATCTGAAACTTCTTTGTGAACAAAATGAAGAAGAAGTTTCT
CCACAGTTGTTTACTTTCCACGAAGCCGTCTCCCAGATGGTAGAGATGGAGGAACAGGTTGTGGAAGACCACAGGGCAGT
GTTCCAGGAATCCATTCGCTGGATAGAAGATGAAAAGGCTCTCCTAGAGATGACTGAAGAAGTAGACTATGATGTAGACT
CATATGCTACACAGCTTGAAGCTATTCTTGAGCAAAAAATAGACATTTTAACTGAGTTACGAGATAAAGTGAAATCTTTT
CGTGCAGCGCTACAAGAAGAAGAACAAGCCAGCAAGCAGATTAACCCCAAGAGACCCCGAGCCCTCTAA

Library Parental gene expression (RPM)
SRP017611_liver 5 .58 RPM
SRP017611_kidney 17 .72 RPM
SRP017611_brain 59 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Anas platyrhynchos ENSAPLG00000009519 possible_ortholog 1 retrogene
retro_apla_3,
Bos taurus ENSBTAG00000015022 ortholog_one2one 1 retrogene
retro_btau_180,
Choloepus hoffmanni ENSCHOG00000007888 ortholog_one2one 1 retrogene
retro_chof_1348,
Cavia porcellus ENSCPOG00000009393 ortholog_one2one 1 retrogene
retro_cpor_72,
Dipodomys ordii ENSDORG00000006335 ortholog_one2one 1 retrogene
retro_dord_763,
Equus caballus ENSECAG00000019810 ortholog_one2one 1 retrogene
retro_ecab_32,
Homo sapiens ENSG00000068796 ortholog_one2one 1 retrogene
retro_hsap_69,
Gorilla gorilla ENSGGOG00000004774 ortholog_one2one 1 retrogene
retro_ggor_68,
Macaca mulatta ENSMMUG00000000399 ortholog_one2one 1 retrogene
retro_mmul_145,
Monodelphis domestica ENSMODG00000019605 ortholog_one2one 1 retrogene
retro_mdom_242,
Mus musculus ENSMUSG00000021693 ortholog_one2one 1 retrogene
retro_mmus_68,
Nomascus leucogenys ENSNLEG00000002865 ortholog_one2one 1 retrogene
retro_nleu_2329,
Oryctolagus cuniculus ENSOCUG00000010466 ortholog_one2one 1 retrogene
retro_ocun_156,
Otolemur garnettii ENSOGAG00000000527 ortholog_one2one 5 retrogenes
retro_ogar_126, retro_ogar_3166, retro_ogar_3498, retro_ogar_3501, retro_ogar_672,
Ochotona princeps ENSOPRG00000011768 ortholog_one2one 1 retrogene
retro_opri_815,
Procavia capensis ENSPCAG00000005089 ortholog_one2one 1 retrogene
retro_pcap_22,
Sorex araneus ENSSARG00000007768 ortholog_one2one 1 retrogene
retro_sara_457,
Sarcophilus harrisii ENSSHAG00000001950 ortholog_one2one 1 retrogene
retro_shar_30,
Ictidomys tridecemlineatus ENSSTOG00000012710 ortholog_one2one 1 retrogene
retro_itri_40,
Tupaia belangeri ENSTBEG00000009396 ortholog_one2one 1 retrogene
retro_tbel_761,
Tarsius syrichta ENSTSYG00000002115 ortholog_one2one 1 retrogene
retro_tsyr_1791,
Vicugna pacos ENSVPAG00000008864 ortholog_one2one 1 retrogene
retro_vpac_572,
Drosophila melanogaster FBgn0030268 ortholog_many2many 2 retrogenes
retro_dmel_1, retro_dmel_2,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_47 70.44 63.64
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2. retro_rnor_1284 99.20 53.12
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Download FASTA sequences of all ENSRNOG00000014000 retrocopies