RetrogeneDB ID:

retro_dmel_2

Retrocopy
location
Organism:Fruit fly (Drosophila melanogaster)
Coordinates:2R:19011549..19013430(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:FBgn0034824
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:Klp10A
Ensembl ID:FBgn0030268
Aliases:None
Description:Klp10A [Source:FlyBase gene name;Acc:FBgn0030268]


Retrocopy-Parental alignment summary:






>retro_dmel_2
ATGGATAAGTTGTCGATCGAACAGAAGATTTTCATCCGTCGCTCGGACGGTAGAGTCCACTTGGCGGAGATTATCAAACT
GGAGGGCGGTGACTCCAAGCTGATTACGGTGGAGTGGCCCGAAGGACATACGGTGCGTGGTAAGGAACTGCCCCTGGAGC
TGGTGGTCCTGATGAATCCTCATATCTTCGACTCGCCCCGCTGCAGTGGCGGCAATGCGGCGTCAGCCAATCAAACTGCC
TCCATATCGCCACGTTCAATGAAACAACGAATAGCGACTGGGAGCTTATCTCCTGTACTGGCCACTGCCCCGCCACGCCA
GCAGACGGCGCCGCCAGTTCGAGAGGACGAGGTGGTGCACCAGGCTGAAAGAATGCGAAAAGAACGGGAACGGAGGCGAG
AAGCACAAGCCAGGACTCGTCTAGATCGGGAGCAGGGGAAGAACGAAGATCCGGGAAATCCCAACTGGGAAGTAGCCAGA
ATGATACGACTGCAACGCGAGCAAATGGAGAGTCAGCGGGTGAGAAGTGGTACTACGAACGAACGAATCAATTGCCACCA
AATTATGGTTTGTGTGAGGAAGAGACCACTGAGGCGCAAGGAGCTGGCTGACCGGGAACAGGATGTGGTCAGCATTCCGT
CTAAGCACACATTGGTGGTCCACGAGCCCCGCAAGCATGTGAACCTGGTCAAGTTCCTGGAAAATCATAGCTTCCGTTTC
GATTACGTCTTCGACGAGGAGTGCTCCAATGCCACGGTCTACGAATTCACAGCCCGACCCTTGATAAAGCACATTTTTGA
TGGCGGAATGGCCACGTGTTTCGCCTACGGACAAACTGGAAGCGGCAAGACCTATACGATGGGTGGTCAGTTCCCCGGAA
GGCATCAGAGCTCAATGGATGGCATCTATGCAATGGCCGCTAAGGACGTGTTCTCCACTCTAAAGACGGTTCCCTATAAC
AAGCTTAATCTGAAAGTTTACTGCAGCTTCTTCGAGATCTACGGCACCCGGGTGTTCGATCTCCTGATGCCTGGCAAGCC
ACAACTGCGTGTCTTGGAGGATAGAAACCAGCAGGTGCAAGTGGTGGGCCTCACCCAGAATCCAGTACAGAACACCGCCG
AAGTTCTGGACCTACTCGAGTTGGGCAATAGTGTCCGAACCTCGGGTCACACCTCTGCCAATTCCAAGTCCTCCCGATCG
CATGCTGTGTTCCAAATCGTGCTGAGATCCGCGGCGGGCGAGAAGCTACACGGGAAATTCTCGCTTATAGATCTGGCCGG
GAATGAAAGAGGAGCGGACAACAGCTCGGCGGATCGACAGACGCGCCTGGAAGGATCCGAGATCAATAAATCGCTGCTGG
TCCTCAAGGAATGCATTCGCGCTCTGGGGCGCCAGTCGAGTCATTTGCCATTCCGTGGCTCCAAGCTGACCCAAGTCCTG
CGGGACTCCTTCATCGGAGGTAAGAAGGTGAAAACCTGCATGATAGCCATGATCTCGCCATGCTTGCATTCGGTGGAGCA
TACCTTGAACACGCTGCGTTATGCGGATCGGGTGAAGGAACTAAGTGTGGAGTCGATCCCATCTAAACGGATGCCCGATG
CCAACCTTGGAAGCACTTCCATGTCAGATATTGTTTGCCAGTCGTCCACCCAGCGACTCTTTCCATGTGCCTCCTCCACA
TCGATGCCAGGTGGTGGCAACCAAGCGCAGCAACACACCAACACCGCGAACGACTTGAACAGATCCCAGAAACCAACATC
TAAGCCCACTTATCCCACATCCGGTCAGCAGCTGGTCCAGAGGAAGGGAAGCTCCCAACGGGAGGCCTCCATGATGCTGA
CCAAATCCCTGGCACAATTCCGAGGGCGCAACTTTCCCTAA

ORF - retro_dmel_2 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 61.93 %
Parental protein coverage: 53.54 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalSAGPAAQGVATAATTQGAGGASTRRSHALKEVERLKENREKRRARQAEMKEEKVALMNQDPGNPNWETAQ
..G......ATA...Q.......R........ER....RE.RR..QA..........N.DPGNPNWE.A.
RetrocopyATGSLSPVLATAPPRQQTA-PPVREDEVVHQAERMRKERERRREAQARTRLDREQGKNEDPGNPNWEVAR
ParentalMIREYQSTLEFVPLLDG---QAVDDHQITVCVRKRPISRKEVNRKEIDVISVPRKDMLIVHEPRSKVDLT
MIR......E......G........HQI.VCVRKRP..RKE....E.DV.S.P.K..L.VHEPR..V.L.
RetrocopyMIRLQREQMESQRVRSGTTNERINCHQIMVCVRKRPLRRKELADREQDVVSIPSKHTLVVHEPRKHVNLV
ParentalKFLENHKFRFDYAFNDTCDNAMVYKYTAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGEFNGKVQDCKN
KFLENH.FRFDY.F...C.NA.VY..TA.PL.K.IF.GGMATCFAYGQTGSGKT.TMGG.F.G..Q....
RetrocopyKFLENHSFRFDYVFDEECSNATVYEFTARPLIKHIFDGGMATCFAYGQTGSGKTYTMGGQFPGRHQSSMD
ParentalGIYAMAAKDVFVTLNMPRYRAMNLVVSASFFEIYSGKVFDLLSD-KQKLRVLEDGKQQVQVVGLTEKVVD
GIYAMAAKDVF.TL....Y...NL.V..SFFEIY...VFDLL...K..LRVLED..QQVQVVGLT...V.
RetrocopyGIYAMAAKDVFSTLKTVPYNKLNLKVYCSFFEIYGTRVFDLLMPGKPQLRVLEDRNQQVQVVGLTQNPVQ
ParentalGVEEVLKLIQHGNAARTSGQTSANSNSSRSHAVFQIVLRPQGSTKIHGKFSFIDLAGNERGVDTSSADRQ
...EVL.L...GN..RTSG.TSANS.SSRSHAVFQIVLR.....K.HGKFS.IDLAGNERG.D.SSADRQ
RetrocopyNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLRSAAGEKLHGKFSLIDLAGNERGADNSSADRQ
ParentalTRMEGAEINKSLLALKECIRALGKQSAHLPFRVSKLTQVLRDSFI-GEKSKTCMIAMISPGLSSCEHTLN
TR.EG.EINKSLL.LKECIRALG.QS.HLPFR.SKLTQVLRDSFI.G.K.KTCMIAMISP.L.S.EHTLN
RetrocopyTRLEGSEINKSLLVLKECIRALGRQSSHLPFRGSKLTQVLRDSFIGGKKVKTCMIAMISPCLHSVEHTLN
ParentalTLRYADRVKELVVKDI
TLRYADRVKEL.V..I
RetrocopyTLRYADRVKELSVESI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Drosophila melanogaster was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_dmel_2 retrocopy.

TSS - click to see more details

Drosophila melanogaster was not studied using FANTOM5 data.

Lab - click to see more details

retro_dmel_2 was not experimentally validated.

Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 30 parental genes, and 36 retrocopies.

Species Parental gene accession Retrocopies number
Anas platyrhynchos ENSAPLG000000095191 retrocopy
retro_apla_3,
Bos taurus ENSBTAG000000150221 retrocopy
retro_btau_180,
Choloepus hoffmanni ENSCHOG000000078881 retrocopy
retro_chof_1348,
Cavia porcellus ENSCPOG000000093931 retrocopy
retro_cpor_72,
Dipodomys ordii ENSDORG000000063351 retrocopy
retro_dord_763,
Equus caballus ENSECAG000000198101 retrocopy
retro_ecab_32,
Homo sapiens ENSG000000687961 retrocopy
retro_hsap_69,
Gorilla gorilla ENSGGOG000000047741 retrocopy
retro_ggor_68,
Macaca mulatta ENSMMUG000000003991 retrocopy
retro_mmul_145,
Monodelphis domestica ENSMODG000000196051 retrocopy
retro_mdom_242,
Mus musculus ENSMUSG000000216931 retrocopy
retro_mmus_68,
Mus musculus ENSMUSG000000286781 retrocopy
retro_mmus_1251,
Nomascus leucogenys ENSNLEG000000028651 retrocopy
retro_nleu_2329,
Oryctolagus cuniculus ENSOCUG000000104661 retrocopy
retro_ocun_156,
Otolemur garnettii ENSOGAG000000005275 retrocopies
retro_ogar_126, retro_ogar_3166, retro_ogar_3498, retro_ogar_3501, retro_ogar_672,
Otolemur garnettii ENSOGAG000000069161 retrocopy
retro_ogar_1892,
Ochotona princeps ENSOPRG000000117681 retrocopy
retro_opri_815,
Procavia capensis ENSPCAG000000050891 retrocopy
retro_pcap_22,
Pongo abelii ENSPPYG000000014271 retrocopy
retro_pabe_88,
Pteropus vampyrus ENSPVAG000000098561 retrocopy
retro_pvam_3,
Rattus norvegicus ENSRNOG000000140002 retrocopies
retro_rnor_1284, retro_rnor_47,
Sorex araneus ENSSARG000000077681 retrocopy
retro_sara_457,
Sarcophilus harrisii ENSSHAG000000019501 retrocopy
retro_shar_30,
Sus scrofa ENSSSCG000000039311 retrocopy
retro_sscr_25,
Ictidomys tridecemlineatus ENSSTOG000000127101 retrocopy
retro_itri_40,
Tupaia belangeri ENSTBEG000000093961 retrocopy
retro_tbel_761,
Tarsius syrichta ENSTSYG000000021151 retrocopy
retro_tsyr_1791,
Tursiops truncatus ENSTTRG000000007481 retrocopy
retro_ttru_1318,
Vicugna pacos ENSVPAG000000088641 retrocopy
retro_vpac_572,
Drosophila melanogaster FBgn0030268 2 retrocopies
retro_dmel_1, retro_dmel_2 ,


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