Parental gene:

RAB5A, ENSMMUG00000006992

Aliases:None
Description:ras-related protein Rab-5A [Source:RefSeq peptide;Acc:NP_001248077]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:2:162198815..162235160(+)


>ENSMMUG00000006992
ATGGCTAATCGAGGCGCAACAAGACCCAACGGGCCAAATACTGGAAATAAAATATGCCAGTTCAAACTAGTACTTCTGGG
AGAGTCTGCTGTTGGCAAATCAAGCCTAGTGCTTCGTTTTGTGAAAGGCCAATTTCATGAATTTCAAGAGAGTACCATTG
GGGCTGCTTTTCTAACCCAAACTGTATGTCTTGATGACACTACAGTAAAGTTTGAAATATGGGATACAGCTGGTCAAGAA
CGATACCATAGCCTAGCACCAATGTACTACAGAGGAGCACAAGCAGCCATAGTTGTATATGATATCACAAATGAGGAGTC
CTTTGCAAGAGCAAAAAATTGGGTTAAAGAACTTCAGAGGCAAGCAAGTCCTAACATTGTAATAGCTTTATCAGGAAACA
AGGCCGACCTAGCAAATAAAAGAGCAGTAGATTTCCAGGAAGCACAGTCCTATGCAGATGACAATAGTTTATTATTCATG
GAGACATCAGCTAAAACATCAATGAATGTAAATGAAATATTCATGGCAATAGCTAAAAAATTGCCAAAGAATGAACCACA
AAATCCAGGAGCAAATTCTGCCAGAGGAAGAGGAGTAGACCTCACCGAACCCACACAACCAACCAGGAGTCAGTGTTGTA
GTAACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 31 .65 RPM
SRP007412_brain 61 .63 RPM
SRP007412_cerebellum 45 .65 RPM
SRP007412_heart 21 .14 RPM
SRP007412_kidney 26 .64 RPM
SRP007412_liver 11 .36 RPM
SRP007412_testis 22 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000954 ortholog_one2many 1 retrogene
retro_amel_958,
Bos taurus ENSBTAG00000046385 ortholog_one2many 1 retrogene
retro_btau_300,
Callithrix jacchus ENSCJAG00000003731 ortholog_many2many 1 retrogene
retro_cjac_3268,
Cavia porcellus ENSCPOG00000005322 ortholog_one2many 2 retrogenes
retro_cpor_1213, retro_cpor_219,
Dipodomys ordii ENSDORG00000012429 ortholog_one2many 1 retrogene
retro_dord_288,
Felis catus ENSFCAG00000004455 ortholog_one2many 2 retrogenes
retro_fcat_1349, retro_fcat_984,
Homo sapiens ENSG00000144566 ortholog_one2many 1 retrogene
retro_hsap_1074,
Gorilla gorilla ENSGGOG00000015981 ortholog_one2many 1 retrogene
retro_ggor_848,
Loxodonta africana ENSLAFG00000008321 ortholog_one2many 1 retrogene
retro_lafr_267,
Macaca mulatta ENSMMUG00000005692 within_species_paralog 1 retrogene
retro_mmul_1557,
Macaca mulatta ENSMMUG00000014761 within_species_paralog 1 retrogene
retro_mmul_2022,
Monodelphis domestica ENSMODG00000014793 ortholog_one2many 2 retrogenes
retro_mdom_1219, retro_mdom_1993,
Mus musculus ENSMUSG00000017831 ortholog_one2many 1 retrogene
retro_mmus_1645,
Nomascus leucogenys ENSNLEG00000003434 ortholog_one2many 1 retrogene
retro_nleu_2466,
Oryctolagus cuniculus ENSOCUG00000012200 ortholog_one2many 1 retrogene
retro_ocun_1034,
Pongo abelii ENSPPYG00000014074 ortholog_one2many 2 retrogenes
retro_pabe_3094, retro_pabe_894,
Pan troglodytes ENSPTRG00000014682 ortholog_one2many 1 retrogene
retro_ptro_731,
Ictidomys tridecemlineatus ENSSTOG00000026229 ortholog_one2many 1 retrogene
retro_itri_398,
Tarsius syrichta ENSTSYG00000007642 ortholog_one2many 3 retrogenes
retro_tsyr_1544, retro_tsyr_315, retro_tsyr_946,
Tursiops truncatus ENSTTRG00000001374 ortholog_one2many 1 retrogene
retro_ttru_949,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_227 95.35 100.00
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2. retro_mmul_839 87.88 76.28
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Download FASTA sequences of all ENSMMUG00000006992 retrocopies