RetrogeneDB ID: | retro_mmur_1026 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | scaffold_16520:1144..1486(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP1S1 | ||
Ensembl ID: | ENSMICG00000005406 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 1, sigma 1 subunit [Source:HGNC Symbol;Acc:559] |
Percent Identity: | 63.48 % |
Parental protein coverage: | 73.25 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | KKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSV |
K...RE..Q.VLARKPK....L.........K.......CCAIEGQDN.LI.L..IH.YVELLDKYFGSV | |
Retrocopy | KRIAREFVQTVLARKPKCAASLSGEIWRLFTKDMV-VCICCAIEGQDN*LIIL*IIHCYVELLDKYFGSV |
Parental | CELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQE |
CELDIIFNFEKAYFI.DE.L.G...Q.TSK..VL.AIEQ.DLLQE | |
Retrocopy | CELDIIFNFEKAYFI*DEYLLGEEAQ*TSKNNVLRAIEQTDLLQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002673 | 1 retrocopy | |
Felis catus | ENSFCAG00000029169 | 1 retrocopy | |
Homo sapiens | ENSG00000106367 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016245 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000005406 | 2 retrocopies |
retro_mmur_1026 , retro_mmur_1368,
|
Microcebus murinus | ENSMICG00000014406 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009898 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000015867 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019520 | 3 retrocopies |