RetrogeneDB ID: retro_mputfur_1184

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897037.1:225131..225507(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000004743
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: AP1S1
• Ensembl ID: ENSMPUG00000015867
• Aliases: None
• Description: adaptor-related protein complex 1, sigma 1 subunit [Source:HGNC Symbol;Acc:559]

Sequence

>retro_mputfur_1184
CTGGCCACGGCAGACACGCCGCGAAGGACCGCGGCTCCGGAGCTTATGCAGGTCGTTCCGGCTTGCAAGCCCATGATGTG
CAGCTTCCCGGAGGAGAAGGACCTCAAAGCCGTCTATAAAAGATACGCCAGCCTCTACTGCTGCGCCGTGGAGCGCGTGG
ACGATGCACTCGTCCTGCCGGAGCCGATGCGCCGAGGTGTGAAGCTGCTGGACTCCTACTTCCGCAGCGCGTGCGAGATG
GACTTCGGCTTTAACCTTGAGAAGGCCGGCTTCCTCCGGCATGAGATTTCGATGGGGGGATGAAATCCAGGACAGCTTCA
GAGAGCGTGTGCTGAAGGCCATGAGGCAGGCTGACCTGCTGCAGGTGGAGGAGGAG

Alignment

ORF - retro_mputfur_1184 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 57.48 %
• Parental protein coverage: 79.75 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVEL
          LAT.D..R.....ELMQVV.A.KP.MCSF.E..DLK.VYKRYASLY.CCA.E..D..L...E...R.V.L
Retrocopy LATADTPRRTAAPELMQVVPACKPMMCSFPEEKDLKAVYKRYASLY-CCAVERVDDALVLPEPMRRGVKL

Parental  LDKYFGSVCELDIIFNFEKAYFILDEFLMGG-DVQDTSKKSVLKAIEQADLLQEEDE
          LD.YF.S.CE.D..FN.EKA.F...E..MGG...QD.....VLKA..QADLLQ.E.E
Retrocopy LDSYFRSACEMDFGFNLEKAGFLRHEISMGG>EIQDSFRERVLKAMRQADLLQVEEE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1184 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1184 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000002673	1 retrocopy	retro_amel_210,
Felis catus	ENSFCAG00000029169	1 retrocopy	retro_fcat_152,
Homo sapiens	ENSG00000106367	1 retrocopy	retro_hsap_3765,
Macropus eugenii	ENSMEUG00000016245	3 retrocopies	retro_meug_1011, retro_meug_154, retro_meug_2051,
Microcebus murinus	ENSMICG00000005406	2 retrocopies	retro_mmur_1026, retro_mmur_1368,
Myotis lucifugus	ENSMLUG00000009898	2 retrocopies	retro_mluc_1493, retro_mluc_2061,
Mustela putorius furo	ENSMPUG00000015867	1 retrocopy	retro_mputfur_1184 ,
Pan troglodytes	ENSPTRG00000019520	3 retrocopies	retro_ptro_1234, retro_ptro_24, retro_ptro_2554,