RetrogeneDB ID: | retro_nleu_1658 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397303.1:3340130..3340643(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PGAM1 | ||
Ensembl ID: | ENSNLEG00000013804 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.41 % |
Parental protein coverage: | 67.72 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | LENRFSGWYDADL-SPAGHEEAKRGGQALRDAGYEFDICFTSVQKRAIRTLWTVLDAIDQMWLPVVRTWR |
LE..F.GW....L.SPA.HE.A.RGG..L.D.GYEF.I.FTSVQK....TLW.VLDAI.Q.WL.VVRTW. | |
Retrocopy | LEPPFCGW*HVNL>SPASHEQA*RGGKVL*DVGYEFNIFFTSVQKKVTWTLWAVLDAIGQRWLLVVRTWH |
Parental | LNERHYGGLTGL-NKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNISKDRRYADLTEDQLPSCES |
L...H.GGLT...NKA.TAAKH.EAQVKIWR.SY.V.PPP.EPDHPFYSN.SKD.RYAD.TEDQLP...S | |
Retrocopy | LSKLH*GGLTNP<NKAQTAAKHAEAQVKIWRCSYAVLPPPKEPDHPFYSNVSKDCRYADPTEDQLPPV-S |
Parental | LKDTIARALPFWNEEIVPQIKEGKRVLIAAHGNS |
LKDT.ARALPFWNEEIVPQIKEGKRVL.AAHG.S | |
Retrocopy | LKDTTARALPFWNEEIVPQIKEGKRVLTAAHGSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012697 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000009062 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016575 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000002467 | 1 retrocopy | |
Homo sapiens | ENSG00000171314 | 12 retrocopies | |
Gorilla gorilla | ENSGGOG00000028602 | 13 retrocopies | |
Loxodonta africana | ENSLAFG00000015979 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020027 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000004242 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013804 | 10 retrocopies |
retro_nleu_1367, retro_nleu_1535, retro_nleu_1658 , retro_nleu_2012, retro_nleu_2139, retro_nleu_2196, retro_nleu_2205, retro_nleu_2488, retro_nleu_2667, retro_nleu_280,
|
Rattus norvegicus | ENSRNOG00000050585 | 7 retrocopies | |
Drosophila melanogaster | FBgn0014869 | 1 retrocopy |