RetrogeneDB ID: | retro_ggor_1824 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:9651709..9652308(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000023781 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PGAM1 | ||
Ensembl ID: | ENSGGOG00000028602 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.8 % |
Parental protein coverage: | 87.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | EFDICFTSVQKRAIRTLWTVLDAIDQMWLPVVRT-WRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSY |
EFDICFTSVQKR.I.TLWTVLDAIDQ.WL.VVR..W.LNERH.GGLT.LNKAETAAKHGEAQVKIWR.SY | |
Retrocopy | EFDICFTSVQKRVIQTLWTVLDAIDQTWLSVVRI<WCLNERHSGGLTSLNKAETAAKHGEAQVKIWRHSY |
Parental | DVPPPPMEPDHPFYSNISKDRRYADLTEDQLPSCESLKDTIARALPFWNEEIVPQIKEGKRVLIAAHGNS |
DVPPP.MEP.HPFY.NISKDRR.A.LTEDQLPSCESLKDTIA.ALPFWNEEIVP.IKEGK.VLIAAHGNS | |
Retrocopy | DVPPPLMEPNHPFY-NISKDRRFAHLTEDQLPSCESLKDTIAKALPFWNEEIVPHIKEGKQVLIAAHGNS |
Parental | LRGIVKHLEGLSEEAIMELNLPTGIPIVYELDKNLKPIKPMQFLGDEETVRKAMEAVAAQGKAKK |
.RGIVKHLEGLSEEAI.ELNLPTGIP.VYELDKNLKPI...QFLGDEET.RKAMEAVAAQGKAKK | |
Retrocopy | PRGIVKHLEGLSEEAIRELNLPTGIPVVYELDKNLKPI---QFLGDEETTRKAMEAVAAQGKAKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .10 RPM | 248 .16 RPM |
SRP007412_cerebellum | 0 .04 RPM | 113 .15 RPM |
SRP007412_heart | 0 .03 RPM | 50 .91 RPM |
SRP007412_kidney | 0 .08 RPM | 100 .71 RPM |
SRP007412_liver | 0 .00 RPM | 86 .65 RPM |
SRP007412_testis | 0 .00 RPM | 83 .92 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2604 |
Pan troglodytes | retro_ptro_1755 |
Pongo abelii | retro_pabe_2309 |