RetrogeneDB ID: | retro_rnor_2241 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 5:107512462..107512949(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pgam1 | ||
Ensembl ID: | ENSRNOG00000050585 | ||
Aliases: | Pgam1, Pgmut | ||
Description: | Phosphoglycerate mutase 1 [Source:UniProtKB/Swiss-Prot;Acc:P25113] |
Percent Identity: | 67.24 % |
Parental protein coverage: | 65.75 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 7 |
Parental | NERHYG-GLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNISKDR-RYADLTEDQLPSCES |
NE.H.G.GL.GLN.A.TAA...E.QVKIW..S.DVPPP.ME.DHPFYSN..K.R..YADLT..QL.SCES | |
Retrocopy | NEQHHG<GLIGLNEAKTAAMYCETQVKIWK*SMDVPPPSMEADHPFYSNMRKNR<QYADLTDEQLLSCES |
Parental | LKDTIAR-ALPFWNEEIVPQIKE-GKRVLIAAHGNSL-RGIVKHLEGLSEEAIMELNLPTGIPIVYELDK |
L.DTIA..ALPF.NEE.VPQIKE.GK..L....G.SL..G.VKHLEGLSEE...EL.LP.GIPI.Y.LDK | |
Retrocopy | LGDTIAK<ALPFQNEENVPQIKE>GKGLL---QGSSL<LGMVKHLEGLSEEDVIELSLPKGIPIIYKLDK |
Parental | NLKPIKPMQFLGDEETV-RK-AMEAVAAQGKVKK |
NL.PIKPM...G.EET..RK...EAVAAQ.KVKK | |
Retrocopy | NLNPIKPMECPGNEETA<RK<TVEAVAAQEKVKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 415 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 327 .21 RPM |
SRP017611_liver | 0 .00 RPM | 111 .75 RPM |