Parental gene:

Pgam1, ENSRNOG00000050585

Aliases:Pgam1, Pgmut
Description:Phosphoglycerate mutase 1 [Source:UniProtKB/Swiss-Prot;Acc:P25113]
Organism:Rat (Rattus norvegicus)
Coordinates:1:268610675..268618285(+)


>ENSRNOG00000050585
ATGGCTGCCTACAAGCTGGTGCTGATCCGGCATGGCGAGAGCGCCTGGAACCTGGAGAACCGCTTCAGCGGCTGGTACGA
TGCCGACCTGAGCCCAGCGGGCCACGAGGAGGCGAAGCGCGGCGGGCAGGCGTTGCGAGATGCTGGCTATGAGTTTGACA
TCTGCTTCACCTCTGTGCAGAAGAGAGCAATCCGCACCCTCTGGACAGTCCTGGATGCCATTGACCAGATGTGGTTGCCA
GTGGTCAGGACCTGGCGTCTCAATGAGCGACACTATGGGGGTCTAACAGGTCTCAATAAAGCAGAGACTGCTGCTAAGCA
TGGTGAGGCACAGGTAAAGATCTGGAGACGATCTTACGATGTCCCGCCACCTCCAATGGAGCCTGATCATCCCTTCTACA
GCAACATCAGCAAGGACCGCAGGTACGCAGACCTTACTGAGGACCAGCTACCCTCCTGTGAGAGCCTGAAGGATACTATT
GCCAGGGCACTGCCCTTCTGGAATGAAGAAATTGTCCCCCAGATCAAGGAGGGGAAAAGGGTCTTGATTGCTGCCCATGG
CAACAGCCTACGGGGCATTGTCAAGCATCTGGAGGGTCTGTCAGAAGAGGCCATCATGGAGCTGAACCTGCCAACTGGCA
TCCCCATCGTCTATGAACTGGACAAGAACTTGAAGCCCATCAAGCCCATGCAGTTCCTGGGAGATGAGGAGACCGTGCGT
AAAGCCATGGAAGCTGTGGCTGCTCAGGGCAAGGTGAAGAAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 415 .99 RPM
SRP017611_kidney 327 .21 RPM
SRP017611_liver 111 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012697 possible_ortholog 2 retrogenes
retro_btau_1611, retro_btau_472,
Canis familiaris ENSCAFG00000009062 possible_ortholog 1 retrogene
retro_cfam_1297,
Callithrix jacchus ENSCJAG00000016575 possible_ortholog 1 retrogene
retro_cjac_370,
Cavia porcellus ENSCPOG00000006844 possible_ortholog 4 retrogenes
retro_cpor_158, retro_cpor_539, retro_cpor_605, retro_cpor_660,
Erinaceus europaeus ENSEEUG00000005630 ortholog_one2many 1 retrogene
retro_eeur_680,
Echinops telfairi ENSETEG00000002467 possible_ortholog 1 retrogene
retro_etel_1595,
Homo sapiens ENSG00000171314 possible_ortholog 12 retrogenes
retro_hsap_1048, retro_hsap_1052, retro_hsap_1142, retro_hsap_2235, retro_hsap_2604, retro_hsap_3083, retro_hsap_3488, retro_hsap_4249, retro_hsap_4686, retro_hsap_4821, retro_hsap_885, retro_hsap_913,
Gorilla gorilla ENSGGOG00000028602 ortholog_one2many 13 retrogenes
retro_ggor_1220, retro_ggor_1500, retro_ggor_1667, retro_ggor_1824, retro_ggor_2061, retro_ggor_2118, retro_ggor_2353, retro_ggor_2849, retro_ggor_3005, retro_ggor_3034, retro_ggor_716, retro_ggor_738, retro_ggor_827,
Loxodonta africana ENSLAFG00000015979 possible_ortholog 1 retrogene
retro_lafr_886,
Microcebus murinus ENSMICG00000007657 possible_ortholog 1 retrogene
retro_mmur_135,
Myotis lucifugus ENSMLUG00000009117 possible_ortholog 6 retrogenes
retro_mluc_1280, retro_mluc_1595, retro_mluc_1741, retro_mluc_2246, retro_mluc_632, retro_mluc_745,
Macaca mulatta ENSMMUG00000020027 possible_ortholog 1 retrogene
retro_mmul_119,
Monodelphis domestica ENSMODG00000004242 possible_ortholog 4 retrogenes
retro_mdom_1342, retro_mdom_1893, retro_mdom_610, retro_mdom_668,
Mustela putorius furo ENSMPUG00000017045 possible_ortholog 1 retrogene
retro_mputfur_1409,
Mus musculus ENSMUSG00000011752 ortholog_one2many 6 retrogenes
retro_mmus_1741, retro_mmus_2221, retro_mmus_3012, retro_mmus_411, retro_mmus_729, retro_mmus_769,
Nomascus leucogenys ENSNLEG00000013804 possible_ortholog 10 retrogenes
retro_nleu_1367, retro_nleu_1535, retro_nleu_1658, retro_nleu_2012, retro_nleu_2139, retro_nleu_2196, retro_nleu_2205, retro_nleu_2488, retro_nleu_2667, retro_nleu_280,
Oryctolagus cuniculus ENSOCUG00000005679 possible_ortholog 5 retrogenes
retro_ocun_1016, retro_ocun_1081, retro_ocun_350, retro_ocun_706, retro_ocun_976,
Pongo abelii ENSPPYG00000002530 possible_ortholog 9 retrogenes
retro_pabe_1325, retro_pabe_2309, retro_pabe_2554, retro_pabe_2639, retro_pabe_2881, retro_pabe_3389, retro_pabe_3639, retro_pabe_3749, retro_pabe_671,
Pan troglodytes ENSPTRG00000002807 possible_ortholog 12 retrogenes
retro_ptro_1082, retro_ptro_1580, retro_ptro_1645, retro_ptro_1755, retro_ptro_2080, retro_ptro_2361, retro_ptro_2889, retro_ptro_2890, retro_ptro_3114, retro_ptro_3238, retro_ptro_634, retro_ptro_714,
Rattus norvegicus ENSRNOG00000013532 within_species_paralog 1 retrogene
retro_rnor_2889,
Sarcophilus harrisii ENSSHAG00000018230 ortholog_one2many 1 retrogene
retro_shar_323,
Sus scrofa ENSSSCG00000010517 possible_ortholog 1 retrogene
retro_sscr_373,
Ictidomys tridecemlineatus ENSSTOG00000025955 possible_ortholog 1 retrogene
retro_itri_1187,
Tupaia belangeri ENSTBEG00000005913 possible_ortholog 5 retrogenes
retro_tbel_1677, retro_tbel_1708, retro_tbel_2756, retro_tbel_3667, retro_tbel_563,
Drosophila melanogaster FBgn0014869 ortholog_many2many 1 retrogene
retro_dmel_57,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_691 80.56 84.25
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_rnor_703 89.84 99.61
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_rnor_1669 86.27 100.00
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_rnor_2241 67.24 65.75
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_rnor_2275 85.46 88.98
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_rnor_2361 69.48 59.06
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_rnor_2568 73.02 97.24
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSRNOG00000050585 retrocopies