Parental gene:

PGAM1, ENSBTAG00000012697

Aliases:None
Description:Phosphoglycerate mutase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q3SZ62]
Organism:Cow (Bos taurus)
Coordinates:26:18514078..18520590(+)


>ENSBTAG00000012697
ATGGCCGCCTACAAGCTGGTGCTGATCCGGCACGGTGAGAGCACATGGAACCTGGAGAACCGTTTCAGCGGCTGGTACGA
CGCGGACCTGAGCCCAGCCGGGCACGAGGAGGCGAAGCGAGGCGGGCAGGCGCTGAGAGATGCTGGCTATGAGTTTGACA
TCTGCTTCACCTCAGTGCAGAAGAGAGCAATCCGGACCCTCTGGACAGTGCTGGATGCCATTGACCAAATGTGGCTGCCA
GTGGTGAGGACTTGGCGCCTTAATGAGCGACACTATGGGGGTCTGACTGGCCTCAATAAGGCAGAAACTGCTGCCAAGCA
TGGTGAGGCCCAGGTAAAGATCTGGAGGCGCTCCTATGATGTCCCGCCACCTCCCATGGAGCCCGACCATCCCTTCTACA
GCAACATCAGTAAGGATCGCAGGTACGCAGACCTTACTGAAGACCAGCTGCCCTCCTGTGAGAGTCTGAAGGACACAATT
GCCAGAGCTCTGCCCTTTTGGAATGAAGAAATTGTCCCCCAGATCAAGGAGGGGAAACGGGTACTAATTGCAGCCCATGG
CAACAGCCTCCGGGGCATCGTCAAGCATCTGGAGGGTCTCTCTGAAGAGGCTATCATGGAGCTGAACCTGCCGACTGGCA
TTCCCATGGTCTATGAGTTGGACAAGAACTTGAAGCCCATCAAGCCCATGCAGTTCCTGGGGGATGAGGAGACCGTGCGT
AAAGCCATGGAGGCTGTGGCTGCCCAGGGCAAGGCCAAGAAGTGA

Library Parental gene expression (RPM)
ERP005899_liver 33 .52 RPM
ERP005899_muscle 176 .26 RPM
SRP017611_brain 252 .70 RPM
SRP017611_kidney 166 .02 RPM
SRP017611_liver 96 .50 RPM
SRP030211_testis 40 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000009062 ortholog_one2one 1 retrogene
retro_cfam_1297,
Callithrix jacchus ENSCJAG00000016575 possible_ortholog 1 retrogene
retro_cjac_370,
Erinaceus europaeus ENSEEUG00000005630 possible_ortholog 1 retrogene
retro_eeur_680,
Echinops telfairi ENSETEG00000002467 possible_ortholog 1 retrogene
retro_etel_1595,
Homo sapiens ENSG00000171314 possible_ortholog 12 retrogenes
retro_hsap_1048, retro_hsap_1052, retro_hsap_1142, retro_hsap_2235, retro_hsap_2604, retro_hsap_3083, retro_hsap_3488, retro_hsap_4249, retro_hsap_4686, retro_hsap_4821, retro_hsap_885, retro_hsap_913,
Gorilla gorilla ENSGGOG00000028602 possible_ortholog 13 retrogenes
retro_ggor_1220, retro_ggor_1500, retro_ggor_1667, retro_ggor_1824, retro_ggor_2061, retro_ggor_2118, retro_ggor_2353, retro_ggor_2849, retro_ggor_3005, retro_ggor_3034, retro_ggor_716, retro_ggor_738, retro_ggor_827,
Loxodonta africana ENSLAFG00000015979 ortholog_one2many 1 retrogene
retro_lafr_886,
Microcebus murinus ENSMICG00000007657 possible_ortholog 1 retrogene
retro_mmur_135,
Myotis lucifugus ENSMLUG00000009117 possible_ortholog 6 retrogenes
retro_mluc_1280, retro_mluc_1595, retro_mluc_1741, retro_mluc_2246, retro_mluc_632, retro_mluc_745,
Macaca mulatta ENSMMUG00000020027 possible_ortholog 1 retrogene
retro_mmul_119,
Monodelphis domestica ENSMODG00000004242 possible_ortholog 4 retrogenes
retro_mdom_1342, retro_mdom_1893, retro_mdom_610, retro_mdom_668,
Mus musculus ENSMUSG00000011752 possible_ortholog 6 retrogenes
retro_mmus_1741, retro_mmus_2221, retro_mmus_3012, retro_mmus_411, retro_mmus_729, retro_mmus_769,
Nomascus leucogenys ENSNLEG00000013804 ortholog_one2one 10 retrogenes
retro_nleu_1367, retro_nleu_1535, retro_nleu_1658, retro_nleu_2012, retro_nleu_2139, retro_nleu_2196, retro_nleu_2205, retro_nleu_2488, retro_nleu_2667, retro_nleu_280,
Oryctolagus cuniculus ENSOCUG00000005679 possible_ortholog 5 retrogenes
retro_ocun_1016, retro_ocun_1081, retro_ocun_350, retro_ocun_706, retro_ocun_976,
Rattus norvegicus ENSRNOG00000050585 possible_ortholog 7 retrogenes
retro_rnor_1669, retro_rnor_2241, retro_rnor_2275, retro_rnor_2361, retro_rnor_2568, retro_rnor_691, retro_rnor_703,
Sarcophilus harrisii ENSSHAG00000018230 possible_ortholog 1 retrogene
retro_shar_323,
Tupaia belangeri ENSTBEG00000005913 possible_ortholog 5 retrogenes
retro_tbel_1677, retro_tbel_1708, retro_tbel_2756, retro_tbel_3667, retro_tbel_563,
Drosophila melanogaster FBgn0014869 ortholog_many2many 1 retrogene
retro_dmel_57,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_472 94.88 100.00
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2. retro_btau_1611 95.20 90.16
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Download FASTA sequences of all ENSBTAG00000012697 retrocopies