RetrogeneDB ID: retro_nleu_2639

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397385.1:4099828..4100020(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SS18L2
• Ensembl ID: ENSNLEG00000005848
• Aliases: None
• Description: None

Sequence

>retro_nleu_2639
GACTGGCTGAGGGGCAAGGTGGAAGTCAATTAAGAGACTATCCAGCGGCTCCTTGAGGAGAATGACCAACTGATCCGCTG
TATTGTGGAGTATCAGAACAAGGGCCGAGCGAACGAGTGCATCCAGTGCCAGCTTGTGTTACATAGAAATCTCATTTATT
TGGCTACCATCGCAGATGCCAGCCCAACCAGT

Alignment

ORF - retro_nleu_2639 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.62 %
• Parental protein coverage: 83.12 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DWLRGKAEVNQETIQRLLEENDQLIRCIVEYQNKGRGNECVQYQHVLHRNLIYLATIADASPTS
          DWLRGK.EVN.ETIQRLLEENDQLIRCIVEYQNKGR.NEC.Q.Q.VLHRNLIYLATIADASPTS
Retrocopy DWLRGKVEVN*ETIQRLLEENDQLIRCIVEYQNKGRANECIQCQLVLHRNLIYLATIADASPTS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_2639 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 9 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000000989	1 retrocopy	retro_acar_189,
Dipodomys ordii	ENSDORG00000015005	4 retrocopies	retro_dord_286, retro_dord_39, retro_dord_643, retro_dord_658,
Homo sapiens	ENSG00000008324	1 retrocopy	retro_hsap_557,
Loxodonta africana	ENSLAFG00000021542	2 retrocopies	retro_lafr_754, retro_lafr_92,
Myotis lucifugus	ENSMLUG00000013024	1 retrocopy	retro_mluc_21,
Macaca mulatta	ENSMMUG00000031677	1 retrocopy	retro_mmul_2392,
Nomascus leucogenys	ENSNLEG00000005848	1 retrocopy	retro_nleu_2639 ,
Ochotona princeps	ENSOPRG00000015198	4 retrocopies	retro_opri_401, retro_opri_516, retro_opri_542, retro_opri_593,
Pongo abelii	ENSPPYG00000013979	2 retrocopies	retro_pabe_513, retro_pabe_651,