RetrogeneDB ID: | retro_ocun_318 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:159154572..159155157(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000021284 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSOCUG00000004902 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 83.76 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AFRYSARRRPRCNSLRSSRIRVHPTPGASTMPPKFDPNEIKVVYLRCTG-GEVGATSALAPKIGPLGLSP |
.F.YSA.R.PRCN...SS.I.VH.T..ASTMPPKFDPN.IKVV.L.CTG.GEVG.TSALAPKIGPLGLSP | |
Retrocopy | SFQYSAQRMPRCNFFQSSQIQVHLTSDASTMPPKFDPNKIKVV*LQCTG>GEVGPTSALAPKIGPLGLSP |
Parental | KKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEI |
KKVGD.IAKATGD.KGLRITVKLTIQNRQAQIEV.PS.SALI.KALKE.PRDRKKQKNIKHSGNITFDEI | |
Retrocopy | KKVGDSIAKATGDRKGLRITVKLTIQNRQAQIEVMPSTSALITKALKELPRDRKKQKNIKHSGNITFDEI |
Parental | VNIA-RQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS |
VNIA..Q.RH.SLARELS.TIKEILGT.QSVGCNVD..H.HDIIDDINSGAVECPAS | |
Retrocopy | VNIA<QQRRHQSLARELSRTIKEILGTVQSVGCNVDSHHHHDIIDDINSGAVECPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 100 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 280 .15 RPM |
SRP017611_liver | 0 .15 RPM | 100 .66 RPM |