RetrogeneDB ID: | retro_opri_336 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_5366:89585..89966(+) | ||
Located in intron of: | ENSOPRG00000007383 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSOPRG00000011078 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 73.85 % |
Parental protein coverage: | 78.66 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQ |
MP..FDP..IKVVYL.CT..EV..TS.L.PKIGPLGLS.KKVGDDIAKA.G.W.GL.I.VKLTIQN.QAQ | |
Retrocopy | MPFRFDPSKIKVVYLWCTSSEVDTTSSLVPKIGPLGLSLKKVGDDIAKAVGVWRGLQIMVKLTIQNQQAQ |
Parental | IEVVPSASALII-ALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIK |
I.VV.SAS...I.ALKEPPRD.KKQ.N.K.SGNITFDEIVN.ARQM...SLARELS.TI. | |
Retrocopy | IKVVLSASGRNIKALKEPPRDCKKQ-NMKLSGNITFDEIVNTARQM--CSLARELS*TIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |