RetrogeneDB ID: | retro_opri_479 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_13456:42408..42846(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSOPRG00000011078 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 78.67 % |
Parental protein coverage: | 89.02 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | GGEVGATSALAPKIGPLGLSPKKVGDDIA-KATGDWKGLRIT-VKLTIQNRQAQIEVVPSASALII-ALK |
GGEVG.TSALAPKIGPLGLS.KKV.DDIA..A.GDWKGLRI..VKLTIQ..Q..IEVVPSAS.LII.ALK | |
Retrocopy | GGEVGTTSALAPKIGPLGLSLKKVEDDIA<RACGDWKGLRIR<VKLTIQSQQVHIEVVPSASVLIIKALK |
Parental | EPPRDRKKQKNIKHSGNITFDEIVNIARQ-MRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDI |
EP.RD.KKQKNIKHSG.ITFDEIVNI.....RH..LARELSGTIKEIL.TAQS..CNVDG.H.H.IIDDI | |
Retrocopy | EPLRDCKKQKNIKHSGKITFDEIVNIVCR<VRHKFLARELSGTIKEILETAQSMNCNVDGCHLHNIIDDI |
Parental | NSGAVECPAS |
NSGAVE..AS | |
Retrocopy | NSGAVEFQAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |