Parental gene:

ENSPPYG00000019622

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:9:124352003..124360327(-)


>ENSPPYG00000019622
ATGGCGACAAGGGCGTCTCTGGAAGGCTGGGCAGTGACGACAGTTCTCGCGATTGCCGCGTTTTCCGGCCTATATCCGGC
TTGTCTGCGCGGTTTCCGGCCTCTCGGCTTTCGGCTCGGAGGAGGCCAAGGTGCAACTTTCTTCGGTCGTCCCGAATTCC
GGGTTCATCCGACACCAGCCGCCTCCACCATGCCGCCGAAGTTCGACCCCAACGAGATCAAAGTCGTATACCTGAGGTGC
ACCGGAGGTGAAGTCGGTGCCACTTCTGCCCTGGCCCCCAAGATCGGCCCCCTGGGTCTGTCTCCAAAAAAGGTTGGTGA
TGACATTGCCAAGGCAACAGGTGACTGGAAGGGCCTGAGGATTACAGTGAAACTGACCATTCAGAACAGACAGGCCCAGA
TTGAGGTGGTGCCTTCTGCCTCTGCCCTGATCATCAAAGCCCTCAAGGAACCACCAAGAGACAGAAAGAAACAGAAAAAC
ATTAAACACAGTGGGAATATCACTTTTGATGAGATCGTCAACATTGCTCGACAGATGCGGCACCGATCCTTAGCCAGAGA
ACTCTCTGGAACCATTAAAGAGATCCTGGGGACTGCCCAGTCTGTGGGCTGTAATGTTGATGGCCGCCACCCTCATGACA
TCATAGATGACATCAATAGTGGTGCTGTGGAATGCCCAGCCAGTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 80 .56 RPM
SRP007412_cerebellum 46 .21 RPM
SRP007412_heart 94 .65 RPM
SRP007412_kidney 193 .41 RPM
SRP007412_liver 195 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006963 possible_ortholog 3 retrogenes
retro_btau_102, retro_btau_2, retro_btau_5,
Callithrix jacchus ENSCJAG00000018082 ortholog_many2many 1 retrogene
retro_cjac_221,
Homo sapiens ENSG00000197958 possible_ortholog 41 retrogenes
retro_hsap_1064, retro_hsap_117, retro_hsap_1210, retro_hsap_127, retro_hsap_1311, retro_hsap_1359, retro_hsap_137, retro_hsap_1401, retro_hsap_1592, retro_hsap_1644, retro_hsap_1790, retro_hsap_1850, retro_hsap_1880, retro_hsap_1895, retro_hsap_2005, retro_hsap_2031, retro_hsap_2099, retro_hsap_2123, retro_hsap_2202, retro_hsap_2311, retro_hsap_2381, retro_hsap_2428, retro_hsap_2436, retro_hsap_2456, retro_hsap_2642, retro_hsap_3388, retro_hsap_3405, retro_hsap_3458, retro_hsap_3544, retro_hsap_3578, retro_hsap_3709, retro_hsap_4107, retro_hsap_4121, retro_hsap_4746, retro_hsap_584, retro_hsap_643, retro_hsap_705, retro_hsap_719, retro_hsap_768, retro_hsap_868, retro_hsap_983,
Gorilla gorilla ENSGGOG00000000648 possible_ortholog 34 retrogenes
retro_ggor_1024, retro_ggor_1059, retro_ggor_1086, retro_ggor_1207, retro_ggor_1242, retro_ggor_1377, retro_ggor_1389, retro_ggor_1449, retro_ggor_1511, retro_ggor_1516, retro_ggor_1530, retro_ggor_1645, retro_ggor_1740, retro_ggor_1753, retro_ggor_1806, retro_ggor_1845, retro_ggor_2158, retro_ggor_221, retro_ggor_2232, retro_ggor_2293, retro_ggor_2304, retro_ggor_232, retro_ggor_2334, retro_ggor_2394, retro_ggor_2414, retro_ggor_2506, retro_ggor_262, retro_ggor_2758, retro_ggor_2768, retro_ggor_2949, retro_ggor_541, retro_ggor_600, retro_ggor_637, retro_ggor_942,
Latimeria chalumnae ENSLACG00000015373 ortholog_one2many 3 retrogenes
retro_lcha_31, retro_lcha_87, retro_lcha_92,
Macropus eugenii ENSMEUG00000007380 possible_ortholog 12 retrogenes
retro_meug_1102, retro_meug_1107, retro_meug_1199, retro_meug_1357, retro_meug_1426, retro_meug_1611, retro_meug_1634, retro_meug_1691, retro_meug_1953, retro_meug_265, retro_meug_479, retro_meug_493,
Macaca mulatta ENSMMUG00000000422 ortholog_one2one 2 retrogenes
retro_mmul_1823, retro_mmul_53,
Monodelphis domestica ENSMODG00000004571 possible_ortholog 9 retrogenes
retro_mdom_1061, retro_mdom_1177, retro_mdom_1192, retro_mdom_1526, retro_mdom_1719, retro_mdom_1871, retro_mdom_1947, retro_mdom_309, retro_mdom_925,
Mus musculus ENSMUSG00000038900 possible_ortholog 1 retrogene
retro_mmus_28,
Oryctolagus cuniculus ENSOCUG00000004902 ortholog_one2many 9 retrogenes
retro_ocun_1246, retro_ocun_1632, retro_ocun_1895, retro_ocun_318, retro_ocun_329, retro_ocun_520, retro_ocun_556, retro_ocun_677, retro_ocun_880,
Otolemur garnettii ENSOGAG00000000597 possible_ortholog 120 retrogenes
retro_ogar_1002, retro_ogar_1010, retro_ogar_1049, retro_ogar_1069, retro_ogar_1106, retro_ogar_1117, retro_ogar_1137, retro_ogar_1140, retro_ogar_1181, retro_ogar_1188, retro_ogar_1189, retro_ogar_1192, retro_ogar_1230, retro_ogar_1247, retro_ogar_1263, retro_ogar_1295, retro_ogar_1331, retro_ogar_1341, retro_ogar_1408, retro_ogar_1409, retro_ogar_1427, retro_ogar_1457, retro_ogar_1464, retro_ogar_1489, retro_ogar_1503, retro_ogar_1534, retro_ogar_1536, retro_ogar_1550, retro_ogar_1569, retro_ogar_1570, retro_ogar_1579, retro_ogar_1606, retro_ogar_1621, retro_ogar_1709, retro_ogar_1717, retro_ogar_1739, retro_ogar_1789, retro_ogar_1803, retro_ogar_1810, retro_ogar_1825, retro_ogar_1836, retro_ogar_1881, retro_ogar_1885, retro_ogar_1916, retro_ogar_1923, retro_ogar_1937, retro_ogar_1941, retro_ogar_1948, retro_ogar_1969, retro_ogar_1975, retro_ogar_1987, retro_ogar_2055, retro_ogar_2115, retro_ogar_2134, retro_ogar_2172, retro_ogar_2179, retro_ogar_2180, retro_ogar_2208, retro_ogar_2209, retro_ogar_2230, retro_ogar_2291, retro_ogar_2323, retro_ogar_2387, retro_ogar_2483, retro_ogar_2495, retro_ogar_2511, retro_ogar_2570, retro_ogar_2620, retro_ogar_2622, retro_ogar_2624, retro_ogar_2749, retro_ogar_2768, retro_ogar_2809, retro_ogar_2904, retro_ogar_2935, retro_ogar_2945, retro_ogar_2953, retro_ogar_2980, retro_ogar_3004, retro_ogar_3017, retro_ogar_303, retro_ogar_3035, retro_ogar_3128, retro_ogar_3135, retro_ogar_3164, retro_ogar_3394, retro_ogar_3489, retro_ogar_395, retro_ogar_398, retro_ogar_412, retro_ogar_427, retro_ogar_452, retro_ogar_480, retro_ogar_512, retro_ogar_513, retro_ogar_538, retro_ogar_560, retro_ogar_587, retro_ogar_624, retro_ogar_636, retro_ogar_653, retro_ogar_655, retro_ogar_667, retro_ogar_668, retro_ogar_669, retro_ogar_683, retro_ogar_700, retro_ogar_734, retro_ogar_737, retro_ogar_744, retro_ogar_747, retro_ogar_775, retro_ogar_818, retro_ogar_853, retro_ogar_868, retro_ogar_901, retro_ogar_927, retro_ogar_956, retro_ogar_962, retro_ogar_964,
Ochotona princeps ENSOPRG00000011078 ortholog_one2many 21 retrogenes
retro_opri_100, retro_opri_1018, retro_opri_1066, retro_opri_1110, retro_opri_1210, retro_opri_1217, retro_opri_221, retro_opri_265, retro_opri_336, retro_opri_353, retro_opri_418, retro_opri_461, retro_opri_479, retro_opri_576, retro_opri_638, retro_opri_648, retro_opri_658, retro_opri_672, retro_opri_835, retro_opri_905, retro_opri_986,
Pan troglodytes ENSPTRG00000022808 possible_ortholog 1 retrogene
retro_ptro_21,
Pteropus vampyrus ENSPVAG00000000925 possible_ortholog 15 retrogenes
retro_pvam_100, retro_pvam_1026, retro_pvam_1193, retro_pvam_209, retro_pvam_239, retro_pvam_483, retro_pvam_572, retro_pvam_590, retro_pvam_617, retro_pvam_630, retro_pvam_687, retro_pvam_747, retro_pvam_787, retro_pvam_846, retro_pvam_888,
Rattus norvegicus ENSRNOG00000016220 possible_ortholog 4 retrogenes
retro_rnor_166, retro_rnor_236, retro_rnor_247, retro_rnor_312,
Sarcophilus harrisii ENSSHAG00000017864 possible_ortholog 8 retrogenes
retro_shar_140, retro_shar_266, retro_shar_284, retro_shar_335, retro_shar_346, retro_shar_453, retro_shar_508, retro_shar_646,
Sus scrofa ENSSSCG00000005612 possible_ortholog 14 retrogenes
retro_sscr_1111, retro_sscr_127, retro_sscr_189, retro_sscr_28, retro_sscr_439, retro_sscr_526, retro_sscr_551, retro_sscr_71, retro_sscr_715, retro_sscr_772, retro_sscr_773, retro_sscr_828, retro_sscr_832, retro_sscr_911,
Vicugna pacos ENSVPAG00000005123 possible_ortholog 27 retrogenes
retro_vpac_158, retro_vpac_181, retro_vpac_189, retro_vpac_191, retro_vpac_194, retro_vpac_236, retro_vpac_268, retro_vpac_276, retro_vpac_291, retro_vpac_306, retro_vpac_323, retro_vpac_36, retro_vpac_37, retro_vpac_377, retro_vpac_413, retro_vpac_43, retro_vpac_432, retro_vpac_465, retro_vpac_482, retro_vpac_494, retro_vpac_506, retro_vpac_55, retro_vpac_569, retro_vpac_615, retro_vpac_80, retro_vpac_83, retro_vpac_90,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_488 80.54 64.04
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2. retro_pabe_521 82.20 51.75
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3. retro_pabe_604 85.20 85.09
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4. retro_pabe_620 79.64 72.37
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5. retro_pabe_757 77.44 84.21
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6. retro_pabe_815 96.00 87.28
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7. retro_pabe_831 86.29 85.09
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8. retro_pabe_904 97.44 85.09
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9. retro_pabe_1009 59.17 52.19
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10. retro_pabe_1084 59.17 52.19
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11. retro_pabe_1095 75.19 56.58
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12. retro_pabe_1127 71.51 74.12
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13. retro_pabe_1159 95.71 71.05
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14. retro_pabe_1223 94.03 87.72
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15. retro_pabe_1246 96.92 85.09
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16. retro_pabe_1309 91.28 85.09
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17. retro_pabe_1361 63.04 78.95
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18. retro_pabe_1471 71.04 77.63
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19. retro_pabe_1509 92.78 84.65
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20. retro_pabe_1577 61.42 83.33
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21. retro_pabe_1659 91.72 73.68
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22. retro_pabe_1660 78.67 64.91
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23. retro_pabe_1736 89.47 82.46
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24. retro_pabe_1794 97.45 85.09
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25. retro_pabe_1806 93.25 70.61
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26. retro_pabe_1820 61.68 71.05
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27. retro_pabe_1969 97.99 65.35
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28. retro_pabe_1982 75.38 84.21
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29. retro_pabe_2000 83.20 53.51
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30. retro_pabe_2149 86.15 84.65
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31. retro_pabe_2328 71.11 57.89
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32. retro_pabe_2531 93.40 85.96
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33. retro_pabe_2802 62.10 53.51
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34. retro_pabe_2859 87.56 87.28
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35. retro_pabe_2928 68.46 56.14
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36. retro_pabe_2947 92.86 85.09
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37. retro_pabe_3002 94.97 86.84
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38. retro_pabe_3146 86.98 73.68
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39. retro_pabe_3185 94.36 85.09
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40. retro_pabe_3276 96.45 85.96
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41. retro_pabe_3363 60.85 81.58
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42. retro_pabe_3405 98.09 68.86
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43. retro_pabe_3482 62.71 51.32
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44. retro_pabe_3693 71.29 85.53
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Download FASTA sequences of all ENSPPYG00000019622 retrocopies