Parental gene:

RPL12, ENSSHAG00000017864

Aliases:None
Description:ribosomal protein L12 [Source:HGNC Symbol;Acc:10302]
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL834651.1:3046778..3050778(-)


>ENSSHAG00000017864
AGGTGCAACTTCTTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCGCGTGTGGGTTCTGCGAGTGTGCCTCCTAAGTT
TGTTTCCGTAGTATTTTTAAGATGCACTGGTGGTGAAGTTGGTGCCACATCAGCTCTGGCCCCCAAAATTGGTCCCTTAG
GTCTGTCTCCCAAAAAGGTTGGTGATGACATTGCCAAGGCAACTGGTGACTGGAAAGGGCTGAGAATCACAGTGAAACTT
ACCATTCAGAACAGACAGGCCCAGATTGAGGTTGTGCCTTCTGCCTCAGCTTTGATCATCAAAGCCCTGAAGGAACCTCC
TCGGGACAGAAAGAAGCAGAAAAATATTAAACACAGTGGAAACATCAGTCTTGATGAGATCATCAACATTGCTCGACAGA
TGAGGCACCGATCCTTGGCAAGAGACCTTTCTGGAACCATTAAAGAGATACTTGGAACTGCCCAATCAGTGGGCTGCAAC
ATTGATGGCAGACATCCTCATGATGTCATTGATGACATCAATAGTGGTGCTGTAGAATGTCCAGCA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016712 possible_ortholog 15 retrogenes
Bos taurus ENSBTAG00000006963 possible_ortholog 3 retrogenes
Canis familiaris ENSCAFG00000020136 possible_ortholog 31 retrogenes
Callithrix jacchus ENSCJAG00000018082 possible_ortholog 1 retrogene
Cavia porcellus ENSCPOG00000013769 possible_ortholog 18 retrogenes
Equus caballus ENSECAG00000010622 possible_ortholog 17 retrogenes
Echinops telfairi ENSETEG00000006941 possible_ortholog 7 retrogenes
Felis catus ENSFCAG00000010302 possible_ortholog 31 retrogenes
Gorilla gorilla ENSGGOG00000000648 possible_ortholog 34 retrogenes
Latimeria chalumnae ENSLACG00000015373 ortholog_one2one 3 retrogenes
Loxodonta africana ENSLAFG00000017669 possible_ortholog 10 retrogenes
Macropus eugenii ENSMEUG00000007380 ortholog_one2one 12 retrogenes
Myotis lucifugus ENSMLUG00000009551 possible_ortholog 2 retrogenes
Myotis lucifugus ENSMLUG00000013404 possible_ortholog 1 retrogene
Macaca mulatta ENSMMUG00000000422 possible_ortholog 2 retrogenes
Monodelphis domestica ENSMODG00000004571 ortholog_one2one 9 retrogenes
Mustela putorius furo ENSMPUG00000013832 possible_ortholog 34 retrogenes
Mus musculus ENSMUSG00000038900 possible_ortholog 1 retrogene
Oryctolagus cuniculus ENSOCUG00000004902 possible_ortholog 9 retrogenes
Ochotona princeps ENSOPRG00000011078 possible_ortholog 21 retrogenes
Pongo abelii ENSPPYG00000019622 possible_ortholog 44 retrogenes
Pan troglodytes ENSPTRG00000022808 possible_ortholog 1 retrogene
Rattus norvegicus ENSRNOG00000016220 possible_ortholog 4 retrogenes
Sus scrofa ENSSSCG00000005612 possible_ortholog 14 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000027425 possible_ortholog 7 retrogenes
Tupaia belangeri ENSTBEG00000006304 possible_ortholog 25 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_shar_140 64.66 71.43
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2. retro_shar_266 73.29 80.22
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3. retro_shar_284 60.23 93.41
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4. retro_shar_335 68.45 88.46
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5. retro_shar_346 66.06 59.34
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6. retro_shar_453 65.66 89.01
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7. retro_shar_508 71.54 65.38
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8. retro_shar_646 91.60 71.98
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Download FASTA sequences of all ENSSHAG00000017864 retrocopies