RetrogeneDB ID: | retro_opri_221 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_3762:158670..159066(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSOPRG00000011078 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 71.97 % |
Parental protein coverage: | 79.88 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | PLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALII-ALKEPPRDRKKQKNIKHSGN |
P.GLS.KK.GDDIAKA.G..KGL.I.VKLT..NRQ.Q.EVV..ASALII..LKEPPR..KKQKNI.HS.. | |
Retrocopy | PPGLSLKKMGDDIAKAMGY*KGLQISVKLTTKNRQTQMEVVTLASALIIKVLKEPPRAWKKQKNIRHSED |
Parental | ITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS |
IT..E.VNI.RQM.H.SLARELSGTIKEILGTAQSVGC..D..HPH.IIDDINS..V...AS | |
Retrocopy | ITCNEVVNISRQMCH*SLARELSGTIKEILGTAQSVGCSTDSFHPHHIIDDINSDNVKYLAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |