RetrogeneDB ID: | retro_ocun_80 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:160305458..160306610(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000023768 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IDH3G | ||
Ensembl ID: | ENSOCUG00000016554 | ||
Aliases: | None | ||
Description: | isocitrate dehydrogenase 3 (NAD+) gamma (IDH3G), nuclear gene encoding mitochondrial protein, mRNA [Source:RefSeq mRNA;Acc:NM_001171363] |
Percent Identity: | 72.58 % |
Parental protein coverage: | 97.46 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MALKLTTTAGAVARAVFKPAVLSRPWEVLSTHEAPWRSISSQQTIPPSAKYGGRHTVTMIPGDGIGPELM |
.ALK..TT......A.F........WE.L.......RS.S...T.PP.A.YGG.H.VTMIPGDGIGPELM | |
Retrocopy | VALKMLTTISCSVKAIFQLTIPGHSWEILLGRKISLRSFSFYHTTPPPANYGGQHMVTMIPGDGIGPELM |
Parental | LHVKSVFRHACVPVDFEEVHVSSNADEEDIRNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTSLD |
LH.KS.F.HACVPVDFEEV.V.S...EED..NAIMA.RRNRVALKGNIET.H.LPPSHKS.NN..RT.LD | |
Retrocopy | LHIKSIFKHACVPVDFEEVLVTSASSEEDVHNAIMAVRRNRVALKGNIETDHTLPPSHKSYNNMFRTTLD |
Parental | LYANVIHCKSLPGVVTRHKDIDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQE |
LYANVIH.K.LP.V.T.HKDIDIL.VRENTEGEYS.LEHESV.GV.ESLKIITKAKS.RIAEYAF.L.Q. | |
Retrocopy | LYANVIHFKNLPSVETQHKDIDILVVRENTEGEYSNLEHESVRGVIESLKIITKAKSMRIAEYAFQLTQK |
Parental | SGRKKVTAVHKANIMKLGDGLFLQCCREVAAGYPQIAFESMIVDNTTMQLVSRPQQFDVMVMPNLYGNIV |
.GRKKVTAVHKANIMKLGDGLFLQCC.EVA..YPQ...E.MIVDNTTMQLVSRPQQFDVMVMPNLYGNIV | |
Retrocopy | MGRKKVTAVHKANIMKLGDGLFLQCCTEVASHYPQLTLEGMIVDNTTMQLVSRPQQFDVMVMPNLYGNIV |
Parental | NNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHTYAASIRK |
NNVC.GLVGG.GLV.GANYGH.YAVFETA.R..GK...NKN..NPTA.LL.SC.MLD.LKLH.YA..IR. | |
Retrocopy | NNVCTGLVGGAGLVPGANYGHLYAVFETAARQSGKHLVNKNSVNPTAMLLTSCTMLDYLKLHSYATHIRT |
Parental | AVLASMHNDNMHTPDIGGQGTTSEAIQDIIRNI |
AVLAS..N.N.HTPDIGGQGTT...I..I...I | |
Retrocopy | AVLASLDNKNVHTPDIGGQGTTLDIIHSIMDHI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 141 .17 RPM |
SRP017611_kidney | 0 .00 RPM | 160 .85 RPM |
SRP017611_liver | 0 .00 RPM | 55 .03 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000006029 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015625 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000007365 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013934 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004457 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016554 | 1 retrocopy |
retro_ocun_80 ,
|
Procavia capensis | ENSPCAG00000008973 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000024398 | 1 retrocopy |