Parental gene:

IDH3G, ENSLACG00000007365

Aliases:None
Description:None
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH128796.1:271455..302609(+)


>ENSLACG00000007365
ATGGTTGCCTCCTTCTCCTCGGTACTGGCTGCCTCAAGGGTTTTTAGGCCGGCAGCTCTTCATAATGGACTCGGAAACTC
TTTCAGACTTTTAGGCGTTCATCCAGCTTACCAGAGGAGCACAGCATCTTACACTACCAGTCAACCCATACCTCTGCCTG
CCAAGTATGGGGGCAGACACACAGTCACCATGATCCCTGGGGACGGAATTGGGCCAGAGCTAATGCTGCATGTGAAGGAG
GTTTTCAGGTCTGCATGTGTCCCTGTCGATTTTGAGGAAGTGAACGTGAATTCCTCCAAACCGAGTGAAGACGACATTCA
CAATGCCATCACTGCTATTCGTAGGAATAGAGTTGCACTAAAAGGTAACATTGAGACTAATCATACCCTGCCCGCTTCTC
ACAAATCTAGGAACAGCTTACTGCGGACAACCCTGGACCTGTATGCGAATGTGATTCACTGCCAGAGTTTGCCTGGTGTC
CAAACCCGCCACAAGGATATTGATATTCTGATAGTGCGTGAAAACACGGAGGGGGAATACAGCAACCTGGAGCATGAGAA
TGTGCCTGGTGTGGTGGAAAGCCTGAAGATCATCACCAAGACCAACTCGCTGCGTATCGCTGAGTACGCTTTCAAACTGG
CCAGGGAGAAAGACAGGAAGAAGGTGACGGCAGTGCACAAAGCCAACATCATGAAGCTGGGGGATGGCTTGTTTTTGCAG
TGCTGTAGGGAGGTTGCTGCTGGCTATCCTGACATCAGCTTTGAGAATATGATCGTTGACAATACCACCATGCAGTTGGT
GTCCCGCCCTCAGCAGTTTGACGTTATGGTGATGCCTAACCTGTATGGAAACGTTGTGAACAATGTCTGTGCCGGATTGG
TTGGAGGCCCAGGCCTGGTACCAGGAGCCAATTACGGCACGGCTTATGCCATCTTTGAAACAGCTACAAGAAATACGGGG
AAGAGTATTGCTAATAAGAATATAGCCAACCCAACTGCCATGCTGCTGGCTAGCTGTATGATGCTGGACTACCTCGGTTT
GCATGATTCTGCTGCTTTGGTCCGGAAGGCGATTCTGAGAACCATGAATGAACACAGAATGCACACTCCTGATATTGGCG
GGCAGGGCACTACGTCTGAAGTTGTCCAGTCGATAATCAGACAGATTTATGAGCCAAGTACCAAACAGATGGATGCTATG
TAA

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 11 .18 RPM
DRP000627_kidney 7 .41 RPM
DRP000627_pelvic_fin 16 .44 RPM
DRP000627_pharynx 6 .73 RPM
DRP000627_gill 8 .06 RPM
DRP000627_tail_muscle 7 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018466 ortholog_one2one 1 retrogene
retro_amel_1892,
Bos taurus ENSBTAG00000001059 ortholog_one2one 1 retrogene
retro_btau_1194,
Canis familiaris ENSCAFG00000019286 ortholog_one2one 1 retrogene
retro_cfam_1023,
Callithrix jacchus ENSCJAG00000011185 ortholog_one2one 1 retrogene
retro_cjac_1597,
Dipodomys ordii ENSDORG00000006029 ortholog_one2one 1 retrogene
retro_dord_38,
Equus caballus ENSECAG00000018509 ortholog_one2one 1 retrogene
retro_ecab_941,
Erinaceus europaeus ENSEEUG00000015625 ortholog_one2one 1 retrogene
retro_eeur_248,
Homo sapiens ENSG00000067829 ortholog_one2one 1 retrogene
retro_hsap_759,
Loxodonta africana ENSLAFG00000006904 ortholog_one2one 1 retrogene
retro_lafr_560,
Macropus eugenii ENSMEUG00000013934 ortholog_one2many 1 retrogene
retro_meug_203,
Myotis lucifugus ENSMLUG00000004457 ortholog_one2many 1 retrogene
retro_mluc_396,
Mustela putorius furo ENSMPUG00000008781 ortholog_one2one 1 retrogene
retro_mputfur_644,
Mus musculus ENSMUSG00000002010 ortholog_one2many 1 retrogene
retro_mmus_134,
Nomascus leucogenys ENSNLEG00000013540 ortholog_one2one 1 retrogene
retro_nleu_394,
Oryctolagus cuniculus ENSOCUG00000016554 ortholog_one2many 1 retrogene
retro_ocun_80,
Otolemur garnettii ENSOGAG00000006735 ortholog_one2many 1 retrogene
retro_ogar_25,
Procavia capensis ENSPCAG00000008973 ortholog_one2one 1 retrogene
retro_pcap_361,
Pan troglodytes ENSPTRG00000024398 ortholog_one2one 1 retrogene
retro_ptro_534,
Pteropus vampyrus ENSPVAG00000013163 ortholog_one2one 1 retrogene
retro_pvam_373,
Rattus norvegicus ENSRNOG00000037284 ortholog_one2many 1 retrogene
retro_rnor_209,
Sus scrofa ENSSSCG00000012783 ortholog_one2one 1 retrogene
retro_sscr_662,
Tursiops truncatus ENSTTRG00000011728 ortholog_one2one 1 retrogene
retro_ttru_848,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_17 64.31 84.75
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Download FASTA sequences of all ENSLACG00000007365 retrocopies