RetrogeneDB ID: | retro_sscr_662 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 2:41395239..41395832(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IDH3G | ||
Ensembl ID: | ENSSSCG00000012783 | ||
Aliases: | None | ||
Description: | isocitrate dehydrogenase 3 (NAD+) gamma [Source:HGNC Symbol;Acc:5386] |
Percent Identity: | 54. % |
Parental protein coverage: | 50.26 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MALKVATAAGGAAKAVLRPALLCRP-WEVLGAHEAPRRSFS-QQTIPPSAKYGGRHTVTMIPGDGIGPEL |
.ALK...AA....K....P....RP.W......E..R...S....IPP.AK.GG.HTV..IP.DGIGPEL | |
Retrocopy | IALKILPAARCSVKGHV-PTSYSRPFWKDFLGWEI*RKDLSFKHSIPPAAKHGGWHTVITIPEDGIGPEL |
Parental | MLHVKSVFRHACVPVDFEEVHVSSNADEEDIRNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTSL |
MLH.K.VFRHACVPVD.EEV.V.....EE...NAIM....N...LKGN.ET..NLPPSHKS.N......L | |
Retrocopy | MLHIKNVFRHACVPVDSEEVWVNATSCEEEVHNAIMVVCGNHMDLKGNFETAYNLPPSHKSQNSGFHNTL |
Parental | DLYANVIHCKSLPGVVTR-HRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL |
DLYA.VIH.KSL.GV..R.H...DIL.V..NTEG.YS.LEHE...GV.ESLK....A... | |
Retrocopy | DLYASVIHFKSLLGVESR<HKNIDILVVWKNTEG*YSNLEHERMKGVIESLKLHSYATAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 95 .96 RPM |
SRP014902_testis | 0 .00 RPM | 85 .15 RPM |
SRP018288_heart | 0 .00 RPM | 63 .94 RPM |
SRP018288_kidney | 0 .00 RPM | 77 .72 RPM |
SRP018288_liver | 0 .00 RPM | 52 .29 RPM |
SRP018288_lung | 0 .00 RPM | 57 .53 RPM |
SRP018856_adipose | 0 .00 RPM | 130 .65 RPM |
SRP035408_brain | 0 .00 RPM | 74 .83 RPM |
SRP035408_liver | 0 .00 RPM | 64 .29 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018466 | 1 retrocopy | |
Bos taurus | ENSBTAG00000001059 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000019286 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000011185 | 1 retrocopy | |
Equus caballus | ENSECAG00000018509 | 1 retrocopy | |
Homo sapiens | ENSG00000067829 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000007365 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000006904 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013934 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004457 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000008781 | 1 retrocopy | |
Mus musculus | ENSMUSG00000002010 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013540 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006735 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000013163 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000037284 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000012783 | 1 retrocopy |
retro_sscr_662 ,
|
Tursiops truncatus | ENSTTRG00000011728 | 1 retrocopy |