RetrogeneDB ID:

retro_mluc_396

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429768:5654952..5656131(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000025684
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000004457
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_396
ATGGCGCTGAAGGTGGCCATGGCTGTTGGCGGCCCAGCGAAGGCAGTGCTCAGGCCGGCCCTCCTCTGCCGTCCTTGGGA
GATTCTGGGTGCCAACAAGACCCCCCGGAGGAGCATCTCACAACAAACAATTCCTCCCTCTGCTAAGTACGGCGGGCGGC
ACACGGTGACCATGATCCCAGGGGATGGCATTGGGCCAGAGCTCATGTTGCACGTCAAGTCTGTGTTCAGGCACGCGTGT
GTGCCGGTGGACTTTGAAGAAGTGCACGTGAGCTCCAGTGCTGACGAGGAGGACATCCGCAACGCCATCATGGCCATCCG
CCGAAACCGTGTGGCCCTGAAGGGCAATATTGAAACAAACCATAACCTGCCACCGTCCTACAAATCCCGCAACAACATCC
TTCGCACCAGCCTAGACCTCTATGCCAACGTCATCCGCTGTAAGAGCCTGCCAGGAGTGGTGACCCGGCACAGGGACATA
GACATCCTCATTGTCCGGGAAAACACAGAAGGCGAGTACAGCAGCCTGGAGCACGAGAGTGTGGCAGGCGTGGTGGAGAG
CCTGAAGATCATCACCAAGACCAAGTCCCTGCGCATTGCTGAATACGCCTTCAAACTGGCCCGTGAGACTGGGCGCAAGA
AAGTGACAGCCGTGCACAAGGCCAACATTATGAAACTGGGCGACGGTCTCTTCCTCCAGTGCTGCAAGGAGGTGGCAGCC
CGCTACCCCCAGGTCACCTTCGAGAATATGATTGTGGACAATACCACCATGCAGCTGGTGTCCCGGCCCCAGCAGTTCGA
TGTCATGGTGATGCCCAATCTCTACGGGAACATTGTCAGCAACATCTGCGCAGGGCTGGTCGGGGGCCCTGGCCTTGTGG
CTGGAGCCAACTATGGCCACGTGTACGCTGTGTTTGAGACGGCTACAAGGAACACAGGCAAGAGTATTGCCAATAAGAAT
ATTGCCAACCCCACGGCTACGCTGCTGGCAAGTTGCATGATGCTCGACCACCTAAAGCTCCACTCCTACGCCACCACCAT
CCGCAAGGCTGTCCTGGCATCCATGGACAATGAAAACATGCACACCCCAGACATTGGGGGCCAGGGCACTACGTCGCAAG
CCATCCAGGACATCATCCGCCATATCCGCATCATCAACGGCTGGGCTGTGGAGGCCTAG

ORF - retro_mluc_396 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.17 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMALKVAMAVGGPAKAVLRPALLCRPWEVLGANEAPRRSIS----PPSAKYGGRHTVTMIPGDGIGPELML
MALKVAMAVGGPAKAVLRPALLCRPWE.LGAN..PRRSIS....PPSAKYGGRHTVTMIPGDGIGPELML
RetrocopyMALKVAMAVGGPAKAVLRPALLCRPWEILGANKTPRRSISQQTIPPSAKYGGRHTVTMIPGDGIGPELML
ParentalHVKSVFRHACVPVDFEEVHVSSNADEEDIRNAVMAIRRNRVALKGNIETNHNLPPSYKSRNNILRTSLDL
HVKSVFRHACVPVDFEEVHVSS.ADEEDIRNA.MAIRRNRVALKGNIETNHNLPPSYKSRNNILRTSLDL
RetrocopyHVKSVFRHACVPVDFEEVHVSSSADEEDIRNAIMAIRRNRVALKGNIETNHNLPPSYKSRNNILRTSLDL
ParentalYANVIHCKSLPGVVTRHRDIDILIVRENTEGEYSSLEHESVAGVVESLKIITKTKSLRIAEYAFKLAHET
YANVI.CKSLPGVVTRHRDIDILIVRENTEGEYSSLEHESVAGVVESLKIITKTKSLRIAEYAFKLA.ET
RetrocopyYANVIRCKSLPGVVTRHRDIDILIVRENTEGEYSSLEHESVAGVVESLKIITKTKSLRIAEYAFKLARET
ParentalGRKKVTAVHKANIMKLGDGLFLQCCKEVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVN
GRKKVTAVHKANIMKLGDGLFLQCCKEVAARYPQ.TFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIV.
RetrocopyGRKKVTAVHKANIMKLGDGLFLQCCKEVAARYPQVTFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVS
ParentalNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATTIRKA
N.CAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATTIRKA
RetrocopyNICAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATTIRKA
ParentalVLASMDNENMHTPDIGGQGTTSQAIQDIIRHIRIINGRAVEA
VLASMDNENMHTPDIGGQGTTSQAIQDIIRHIRIING.AVEA
RetrocopyVLASMDNENMHTPDIGGQGTTSQAIQDIIRHIRIINGWAVEA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_396 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 23 parental genes, and 23 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000184661 retrocopy
retro_amel_1892,
Bos taurus ENSBTAG000000010591 retrocopy
retro_btau_1194,
Canis familiaris ENSCAFG000000192861 retrocopy
retro_cfam_1023,
Callithrix jacchus ENSCJAG000000111851 retrocopy
retro_cjac_1597,
Dipodomys ordii ENSDORG000000060291 retrocopy
retro_dord_38,
Equus caballus ENSECAG000000185091 retrocopy
retro_ecab_941,
Erinaceus europaeus ENSEEUG000000156251 retrocopy
retro_eeur_248,
Homo sapiens ENSG000000678291 retrocopy
retro_hsap_759,
Latimeria chalumnae ENSLACG000000073651 retrocopy
retro_lcha_17,
Loxodonta africana ENSLAFG000000069041 retrocopy
retro_lafr_560,
Macropus eugenii ENSMEUG000000139341 retrocopy
retro_meug_203,
Myotis lucifugus ENSMLUG00000004457 1 retrocopy
retro_mluc_396 ,
Mustela putorius furoENSMPUG000000087811 retrocopy
retro_mputfur_644,
Mus musculus ENSMUSG000000020101 retrocopy
retro_mmus_134,
Nomascus leucogenys ENSNLEG000000135401 retrocopy
retro_nleu_394,
Oryctolagus cuniculus ENSOCUG000000165541 retrocopy
retro_ocun_80,
Otolemur garnettii ENSOGAG000000067351 retrocopy
retro_ogar_25,
Procavia capensis ENSPCAG000000089731 retrocopy
retro_pcap_361,
Pan troglodytes ENSPTRG000000243981 retrocopy
retro_ptro_534,
Pteropus vampyrus ENSPVAG000000131631 retrocopy
retro_pvam_373,
Rattus norvegicus ENSRNOG000000372841 retrocopy
retro_rnor_209,
Sus scrofa ENSSSCG000000127831 retrocopy
retro_sscr_662,
Tursiops truncatus ENSTTRG000000117281 retrocopy
retro_ttru_848,


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