RetrogeneDB ID: | retro_opri_937 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_47695:43221..43587(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3B | ||
Ensembl ID: | ENSOPRG00000015952 | ||
Aliases: | None | ||
Description: | H3 histone, family 3B (H3.3B) [Source:HGNC Symbol;Acc:4765] |
Percent Identity: | 68.03 % |
Parental protein coverage: | 89.71 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KAPRKQLATKAARKSAPSTGGVKKPHRYRLGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR |
KAPRKQL.TKA...S..S..GVKKPH.YR.GTV....IR.Y.KST.LLIR.LPF..L..E..QDFKT.L. | |
Retrocopy | KAPRKQLVTKASHNSVLSAAGVKKPHHYRPGTVVFHKIRCYHKSTDLLIRQLPFWHLA*ESSQDFKTNLC |
Parental | FQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
.QS.AIGALQEA.EAYLVGLF.D..LCAIHAK.VT.MPKDIQLA..IR...A | |
Retrocopy | YQSTAIGALQEANEAYLVGLFKDACLCAIHAKHVTVMPKDIQLACHIREDCA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000009661 | 10 retrocopies | |
Loxodonta africana | ENSLAFG00000021624 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000015447 | 10 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000024644 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000015952 | 2 retrocopies |
retro_opri_1180, retro_opri_937 ,
|
Pongo abelii | ENSPPYG00000008636 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000024226 | 8 retrocopies |