RetrogeneDB ID: | retro_chof_1580 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_330706:913..1294(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3B | ||
Ensembl ID: | ENSCHOG00000009661 | ||
Aliases: | None | ||
Description: | H3 histone, family 3B (H3.3B) [Source:HGNC Symbol;Acc:4765] |
Percent Identity: | 72.52 % |
Parental protein coverage: | 96.32 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | QTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREI |
QTA..ST...A.RKQLAT.A..KS.PSTG.VKKPH.YRPG......IRRYQKSTELLI.KLPF..LV.EI | |
Retrocopy | QTACQSTDSQASRKQLATEASGKSVPSTGRVKKPHCYRPG-IGHSKIRRYQKSTELLICKLPFWCLV*EI |
Parental | AQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
AQDFKTDL.FQ.AAIGA.QEASE..LVGLFE.TNLCAIHAKRVT...KDIQL.R.I..E.A | |
Retrocopy | AQDFKTDLCFQNAAIGAWQEASEVFLVGLFEETNLCAIHAKRVT---KDIQLTRHIPEECA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |