Parental gene:

H3F3A, ENSOCUG00000024644

Aliases:H3.3A, H3F3A
Description:H3 histone, family 3A (H3.3A), mRNA [Source:RefSeq mRNA;Acc:NM_001171112]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:16:47979571..47987239(+)


>ENSOCUG00000024644
ATGGCTCGTACAAAGCAGACTGCCCGCAAATCGACTGGTGGTAAAGCACCCAGGAAGCAACTGGCTACAAAAGCCGCTCG
CAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGGCCCGGTACTGTGGCACTTCGTGAAATCAGAC
GTTATCAGAAGTCCACTGAGCTTCTGATTCGCAAACTCCCCTTCCAGCGTCTGGTGCGAGAAATCGCTCAGGACTTCAAA
ACAGATCTGCGCTTCCAGAGCGCAGCTATTGGTGCTTTGCAGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGA
CACCAACCTGTGTGCCATCCATGCCAAACGTGTAACAATTATGCCAAAAGACATCCAGCTAGCACGCCGCATACGTGGAG
AACGTGCTTAA

Library Parental gene expression (RPM)
SRP017611_brain 26 .10 RPM
SRP017611_kidney 42 .67 RPM
SRP017611_liver 12 .56 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009765 possible_ortholog 3 retrogenes
retro_amel_1636, retro_amel_1794, retro_amel_192,
Choloepus hoffmanni ENSCHOG00000009661 ortholog_one2many 10 retrogenes
retro_chof_1580, retro_chof_1635, retro_chof_1911, retro_chof_2281, retro_chof_2294, retro_chof_2343, retro_chof_2546, retro_chof_454, retro_chof_517, retro_chof_530,
Cavia porcellus ENSCPOG00000004707 possible_ortholog 7 retrogenes
retro_cpor_1059, retro_cpor_1390, retro_cpor_1524, retro_cpor_432, retro_cpor_695, retro_cpor_842, retro_cpor_853,
Gorilla gorilla ENSGGOG00000022928 ortholog_one2one 7 retrogenes
retro_ggor_1964, retro_ggor_2181, retro_ggor_2198, retro_ggor_2357, retro_ggor_2805, retro_ggor_2905, retro_ggor_2987,
Loxodonta africana ENSLAFG00000021624 ortholog_one2many 4 retrogenes
retro_lafr_172, retro_lafr_410, retro_lafr_546, retro_lafr_832,
Myotis lucifugus ENSMLUG00000015447 possible_ortholog 10 retrogenes
retro_mluc_146, retro_mluc_1571, retro_mluc_2286, retro_mluc_2344, retro_mluc_2364, retro_mluc_246, retro_mluc_2468, retro_mluc_2500, retro_mluc_392, retro_mluc_613,
Mus musculus ENSMUSG00000060743 possible_ortholog 19 retrogenes
retro_mmus_1053, retro_mmus_1116, retro_mmus_1139, retro_mmus_1151, retro_mmus_1254, retro_mmus_2285, retro_mmus_2614, retro_mmus_2934, retro_mmus_3009, retro_mmus_3213, retro_mmus_3425, retro_mmus_395, retro_mmus_498, retro_mmus_808, retro_mmus_884, retro_mmus_885, retro_mmus_886, retro_mmus_959, retro_mmus_960,
Oreochromis niloticus ENSONIG00000019975 possible_ortholog 5 retrogenes
retro_onil_41, retro_onil_46, retro_onil_56, retro_onil_60, retro_onil_63,
Ochotona princeps ENSOPRG00000015952 possible_ortholog 2 retrogenes
retro_opri_1180, retro_opri_937,
Pongo abelii ENSPPYG00000008636 possible_ortholog 1 retrogene
retro_pabe_2662,
Ictidomys tridecemlineatus ENSSTOG00000024226 possible_ortholog 8 retrogenes
retro_itri_315, retro_itri_449, retro_itri_465, retro_itri_505, retro_itri_649, retro_itri_695, retro_itri_764, retro_itri_771,
Tupaia belangeri ENSTBEG00000006177 possible_ortholog 13 retrogenes
retro_tbel_110, retro_tbel_1274, retro_tbel_15, retro_tbel_170, retro_tbel_2335, retro_tbel_3341, retro_tbel_3342, retro_tbel_3820, retro_tbel_391, retro_tbel_487, retro_tbel_592, retro_tbel_783, retro_tbel_978,
Vicugna pacos ENSVPAG00000011531 possible_ortholog 5 retrogenes
retro_vpac_107, retro_vpac_637, retro_vpac_646, retro_vpac_76, retro_vpac_96,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_185 96.32 100.00
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2. retro_ocun_217 98.53 100.00
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Download FASTA sequences of all ENSOCUG00000024644 retrocopies