RetrogeneDB ID: | retro_chof_2281 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_6311:27816..28212(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3B | ||
Ensembl ID: | ENSCHOG00000009661 | ||
Aliases: | None | ||
Description: | H3 histone, family 3B (H3.3B) [Source:HGNC Symbol;Acc:4765] |
Percent Identity: | 71.32 % |
Parental protein coverage: | 96.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | QTARKSTGGKAPRKQLATKAA-RKSAPSTGGVK-KPHRYRPGTVALREIRRYQKSTELLI--RKLPFQRL |
.TA.KS..G.APRKQLATKA...K..PSTGGVK..PH..RPGT.AL.EI.RYQKST.L.I...KLPFQ.L | |
Retrocopy | KTAHKSATGNAPRKQLATKAT<HKRVPSTGGVK<EPHCHRPGTMALAEIQRYQKSTKLMIMIHKLPFQHL |
Parental | VRE-IAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
V.E.IAQ.FKTD..FQSA.IGALQEASE.YLV..FEDT.LC.IHAK.V.IMPKDIQL..RIRGE.A | |
Retrocopy | VPE<IAQVFKTDMCFQSAVIGALQEASEDYLVAHFEDTKLCVIHAKHVGIMPKDIQLIGRIRGESA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |