RetrogeneDB ID: | retro_ocun_185 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 16:60020359..60020770(+) | ||
Located in intron of: | ENSOCUG00000013953 | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000013968 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3A | ||
Ensembl ID: | ENSOCUG00000024644 | ||
Aliases: | H3.3A, H3F3A | ||
Description: | H3 histone, family 3A (H3.3A), mRNA [Source:RefSeq mRNA;Acc:NM_001171112] |
Percent Identity: | 96.32 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR |
MA.TKQTARKSTGGKA.RKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKST.LLI.KLPFQR | |
Retrocopy | MAHTKQTARKSTGGKALRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTGLLICKLPFQR |
Parental | LVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
LVREIAQDFKTDLRFQSAAIGALQEAS.AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA | |
Retrocopy | LVREIAQDFKTDLRFQSAAIGALQEASGAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 3 .48 RPM | 26 .10 RPM |
SRP017611_kidney | 7 .60 RPM | 42 .67 RPM |
SRP017611_liver | 2 .00 RPM | 12 .56 RPM |