RetrogeneDB ID: | retro_rnor_2693 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 9:67607893..67608309(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Psma7 | ||
Ensembl ID: | ENSRNOG00000008630 | ||
Aliases: | None | ||
Description: | proteasome subunit alpha type-7 [Source:RefSeq peptide;Acc:NP_001008218] |
Percent Identity: | 81.43 % |
Parental protein coverage: | 54.72 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | QSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAI |
QSH.L.VEDPVTVEYIT.YIASLKQ.YTQSNG.R.FGISALIVGFDFDGT.RLYQTDP.GTY.A.KANAI | |
Retrocopy | QSH*LIVEDPVTVEYITHYIASLKQHYTQSNGCRTFGISALIVGFDFDGTLRLYQTDPLGTYYACKANAI |
Parental | GRGAKSVREFLEKNYTDDAIETDDLTI-KLVIKALLEVVQSGGKNIELAVMRRDQPLKILSPEEIEKYVA |
G.G.K.V.EFL.KNYTDD.I.T..LTI..LVIKALLEVVQSG..NIELAVMR.DQ.LKIL.PEEIEKYVA | |
Retrocopy | GWGTKLVHEFLKKNYTDDVIKTKELTI<HLVIKALLEVVQSGDRNIELAVMRQDQLLKILDPEEIEKYVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 58 .52 RPM |
SRP017611_kidney | 0 .00 RPM | 94 .49 RPM |
SRP017611_liver | 0 .00 RPM | 55 .94 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014419 | 1 retrocopy | |
Felis catus | ENSFCAG00000003249 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027566 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008630 | 1 retrocopy |
retro_rnor_2693 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000012489 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012281 | 2 retrocopies | |
Drosophila melanogaster | FBgn0004066 | 1 retrocopy |