RetrogeneDB ID: | retro_itri_279 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393281.1:36604684..36605133(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA7 | ||
Ensembl ID: | ENSSTOG00000012489 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 7 [Source:HGNC Symbol;Acc:9536] |
Percent Identity: | 71.52 % |
Parental protein coverage: | 68.98 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | QDERTVRKICALDDNVCMAFAGLTADARIVINRA-RVECQSHRLTVEDPVTVE-YITRYIASLKQRYTQS |
Q..RTVRKIC.LDD..CMAF.GLTAD.R.VINRA.RVECQSH.LT.EDPVTVE.Y.TR.IA.LKQ.YTQ. | |
Retrocopy | QLKRTVRKICVLDDHICMAFGGLTADGRVVINRA<RVECQSHKLTIEDPVTVE*YVTRFIAPLKQKYTQT |
Parental | NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLV |
N...PF.ISALIVGFD.DG..RLYQTDPSGTY.A.K.NAIG..AK.V.EFLEKN.T..AI..D...IKL. | |
Retrocopy | NRKKPFNISALIVGFDNDGILRLYQTDPSGTYNA*KVNAIGPSAKTVPEFLEKNHTEDAIGNDNEVIKLA |
Parental | IKALLEVVQSG |
I..LL.VVQSG | |
Retrocopy | IRVLLKVVQSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014419 | 1 retrocopy | |
Felis catus | ENSFCAG00000003249 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027566 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008630 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012489 | 1 retrocopy |
retro_itri_279 ,
|
Tupaia belangeri | ENSTBEG00000012281 | 2 retrocopies | |
Drosophila melanogaster | FBgn0004066 | 1 retrocopy |