RetrogeneDB ID: | retro_rnor_2891 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:11730819..11731350(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000003789 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Fam133b | ||
Ensembl ID: | ENSRNOG00000009163 | ||
Aliases: | Fam133b, RGD1306302 | ||
Description: | Protein FAM133B [Source:UniProtKB/Swiss-Prot;Acc:Q505I5] |
Percent Identity: | 68.16 % |
Parental protein coverage: | 73.06 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGKRDNRVAYMNPIAMARSRGPIQSSGPTIQDYLNRPRPTWEEVKEQLEKKKKGSKALAEFEEKMNENWK |
M.KRDNRVAYMNPIAMARSRGPIQSSGPTIQDYLNRPRPTWEEVKEQLEKKKKGSKALAEF......... | |
Retrocopy | MRKRDNRVAYMNPIAMARSRGPIQSSGPTIQDYLNRPRPTWEEVKEQLEKKKKGSKALAEFXXXXXXXXX |
Parental | KELEKHREKLLSGNESSSKKRQKKKKEKKKSGRYSSSSSSSSDSSSSSSDSEEEDKKQTKRRKKKKSHCH |
..........LSGNESSS............SGRYSSSSSSSSDSSSSSSDSE.ED............HCH | |
Retrocopy | XXXXXXXXXXLSGNESSSXXXXXXXXXXXXSGRYSSSSSSSSDSSSSSSDSEDEDXXXXXXXXXXXXHCH |
Parental | KSPETSVSDSDSDSKDGSKKKKKSKDITEREKDTKGLSK |
KS.ETS.SDSDSDSKDGS..KKKS.D.TEREK......K | |
Retrocopy | KSRETSASDSDSDSKDGS--KKKSRDVTEREKASQQKEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 27 .90 RPM |
SRP017611_kidney | 0 .14 RPM | 21 .56 RPM |
SRP017611_liver | 0 .00 RPM | 10 .62 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007438 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013910 | 3 retrocopies | |
Equus caballus | ENSECAG00000026810 | 1 retrocopy | |
Homo sapiens | ENSG00000234545 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000029755 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005933 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019802 | 4 retrocopies | |
Mus musculus | ENSMUSG00000058503 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000015333 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025825 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000009163 | 1 retrocopy |
retro_rnor_2891 ,
|
Sus scrofa | ENSSSCG00000015317 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000028195 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011674 | 1 retrocopy |