RetrogeneDB ID: retro_mluc_2301

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430188:68656..69027(+)
• Located in intron of: ENSMLUG00000000395

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FAM133B
• Ensembl ID: ENSMLUG00000005933
• Aliases: None
• Description: None

Sequence

>retro_mluc_2301
GGGAAATGGGACAACCACGAGGCTTATATAGTCCCAAAAGCTATGGCCAGTTCAAAGGGTTCAATCCAGACTTCAGGGTC
AACGATCCACGTTAATTACCTGAATCAACCGAGGCCTACCTGGAAAGAAGTGAAATGACAACTAGAAAAGAAAAAGAAAG
GCTCCAAGGAATTAACTAAATTTGAAGAAAAAAATGAATGAGAACTGAAAGAAAGACCAAGAAAAAGACCAGGGAGAGAT
AATTAAGTGGAAATGGGAGTTCAGCCAAAAGAAGACAGAGCAAGAAAACAGAAAAGAAGAAATCTTCAAGCTCTGATTCT
TCCAGCAGTTCTTCAGATTCTGAAGATGCGAATTTACAAAAAGAAAAAGAG

Alignment

ORF - retro_mluc_2301 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.94 %
• Parental protein coverage: 58.69 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GKRDNRVAYMNPIAMARSRGPVQSSGPTIQ-DYLNRPRPTWEEVKEQLEKKKKGSKALAEFEE-KMNENW
          GK.DN..AY..P.AMA.S.G..Q.SG.TI...YLN.PRPTW.EVK.QLEKKKKGSK.L..FEE.KMNEN.
Retrocopy GKWDNHEAYIVPKAMASSKGSIQTSGSTIHVNYLNQPRPTWKEVK*QLEKKKKGSKELTKFEE>KMNEN*

Parental  KKELEKH-REKLLSGSETSSKKRQRKKKEKKKSGRVKYSSSSSSSSDSSSSSSDSEDE
          KK..EK..RE..LSG...S.K.RQ.KK.EKKKS.....S.SSSSSSDS.......E.E
Retrocopy KKDQEKD>RER*LSGNGSSAKRRQSKKTEKKKSSS---SDSSSSSSDSEDANLQKEKE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2301 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 14 parental genes, and 23 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000007438	1 retrocopy	retro_amel_102,
Callithrix jacchus	ENSCJAG00000013910	3 retrocopies	retro_cjac_1084, retro_cjac_1163, retro_cjac_4095,
Equus caballus	ENSECAG00000026810	1 retrocopy	retro_ecab_95,
Homo sapiens	ENSG00000234545	4 retrocopies	retro_hsap_2336, retro_hsap_3179, retro_hsap_55, retro_hsap_577,
Loxodonta africana	ENSLAFG00000029755	1 retrocopy	retro_lafr_594,
Myotis lucifugus	ENSMLUG00000005933	1 retrocopy	retro_mluc_2301 ,
Macaca mulatta	ENSMMUG00000019802	4 retrocopies	retro_mmul_1415, retro_mmul_226, retro_mmul_420, retro_mmul_765,
Mus musculus	ENSMUSG00000058503	2 retrocopies	retro_mmus_3481, retro_mmus_3519,
Nomascus leucogenys	ENSNLEG00000015333	1 retrocopy	retro_nleu_14,
Pongo abelii	ENSPPYG00000025825	1 retrocopy	retro_pabe_225,
Rattus norvegicus	ENSRNOG00000009163	1 retrocopy	retro_rnor_2891,
Sus scrofa	ENSSSCG00000015317	1 retrocopy	retro_sscr_49,
Ictidomys tridecemlineatus	ENSSTOG00000028195	1 retrocopy	retro_itri_12,
Tupaia belangeri	ENSTBEG00000011674	1 retrocopy	retro_tbel_1,