Parental gene:

MMU.13916, ENSMMUG00000019802

Aliases:None
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:3:124661815..124692221(+)


>ENSMMUG00000019802
ATGGGGAAGCGGGACAATCGGGTGGCCTATATGAACCCAATAGCAATGGCGAGATCAAGAGGTCCAGTCCAGTCTTCAGG
GCCAACAATACAAGATTATCTGAATCGACCAAGGCCTACCTGGGAAGAAGTAAAAGAGCAACTAGAAAAGAAAAAGAAAG
GCTCCAAGGCTTTGGCTGAATTTGAAGAAAAAATGAATGAGAACTGGAAGAAAGAACTGGAAAAACACAGGGAGAAATTA
TTAAGTGGAAGTGAGAGCTCATCCAAAAAAAGACAGAGAAAGAAAAAAGAAAAGAAGAAATCTGGTAGGTATTCATCTTC
TTCTTCATCAAGCTCTGATTCTTCCAGCAGTTCTTCTGATTCCGAAGATGAGGATAAGAAACAAGGAAAACGGAGAAAGA
AAAAGAAGAACCGTTCACATAAATCGTCTGAAAGCTCCATGTCAGAAACTGAATCAGACAGTAAGGATAGTTTAAAAAAG
AAAAAGAAGTCAAAAGATGGAACTGAGAAAGAAAAGGATATTAAAGGACTCAGTAAAAAGAGAAAGATGTATTCTGAAGA
TAAACCTTTATCATCTGAGTCCTTGTCAGAATCAGAGTATATTGAGGAGGTGCGAGCAAAAAAGAAGAAAAGCAGTGAAG
AACGAGAAAAAGCAACAGCAATAGAAAAAACGAAAAAGAAAAAGAAGCATAAGAAACACAGTAAGAAGAAGAAAAAGAAG
GCTGCTAGTTCAAGTCCTGACTCACCATAA

Library Parental gene expression (RPM)
SRP007412_brain 5 .83 RPM
SRP007412_brain_prefrontal_cortex 5 .08 RPM
SRP007412_cerebellum 10 .53 RPM
SRP007412_heart 3 .06 RPM
SRP007412_kidney 3 .87 RPM
SRP007412_liver 1 .15 RPM
SRP007412_testis 1 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007438 ortholog_one2one 1 retrogene
retro_amel_102,
Callithrix jacchus ENSCJAG00000013910 ortholog_one2one 3 retrogenes
retro_cjac_1084, retro_cjac_1163, retro_cjac_4095,
Equus caballus ENSECAG00000026810 ortholog_one2one 1 retrogene
retro_ecab_95,
Homo sapiens ENSG00000234545 ortholog_one2one 4 retrogenes
retro_hsap_2336, retro_hsap_3179, retro_hsap_55, retro_hsap_577,
Loxodonta africana ENSLAFG00000029755 ortholog_one2one 1 retrogene
retro_lafr_594,
Myotis lucifugus ENSMLUG00000005933 ortholog_one2one 1 retrogene
retro_mluc_2301,
Mus musculus ENSMUSG00000058503 ortholog_one2one 2 retrogenes
retro_mmus_3481, retro_mmus_3519,
Nomascus leucogenys ENSNLEG00000015333 ortholog_one2one 1 retrogene
retro_nleu_14,
Pongo abelii ENSPPYG00000025825 ortholog_one2one 1 retrogene
retro_pabe_225,
Rattus norvegicus ENSRNOG00000009163 ortholog_one2one 1 retrogene
retro_rnor_2891,
Sus scrofa ENSSSCG00000015317 ortholog_one2one 1 retrogene
retro_sscr_49,
Ictidomys tridecemlineatus ENSSTOG00000028195 ortholog_one2one 1 retrogene
retro_itri_12,
Tupaia belangeri ENSTBEG00000011674 ortholog_one2one 1 retrogene
retro_tbel_1,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_226 80.51 94.38
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2. retro_mmul_420 73.10 78.71
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3. retro_mmul_765 78.43 81.93
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4. retro_mmul_1415 76.33 81.93
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Download FASTA sequences of all ENSMMUG00000019802 retrocopies