Parental gene:

FAM133B, ENSSSCG00000015317

Aliases:None
Description:family with sequence similarity 133, member B [Source:HGNC Symbol;Acc:28629]
Organism:Pig (Sus scrofa)
Coordinates:9:79200171..79224756(-)


>ENSSSCG00000015317
TATAGTAGAATAAGCAATGAATTTAGAGCCTATATGAACCCGATAGCAATGGCCAGATCAAGGGGTCCAATCCAGTCTTC
AGGTCCAACGATCCAAGATTATCTGAATCGACCAAGGCCTACCTGGGAAGAAGTGAAAGAACAGCTAGAAAAGAAAAAGA
AAGGCTCCAAGGCATTGGCTGAATTTGAAGAAAAAATGAATGAGAACTGGAAGAAAGAACTAGAAAAACACAGGGAGAAA
TTACTAAGTGGGAGCGAGAGCTCATCCAAAAAAAGACAGAGAAAGAAAAAAGAGAAGAAGAAATCTGTATTTGAGAGACT
TAGAAAAAGAAAAAATTCCTGCATCTCACAAGCTTCAATTGTTTTGTGTTTGGTCAAGTATTCATCTTCTTCTTCATCGA
GCTCTGATTCTTCCAGCAGTTCTTCAGATTCTGAAGATGAGGATAAGAAACAAGGAAAAAGGAAAAAGAAAAAGAAGAGC
CGTTCACATAAATCTTCTGAAAGCTCCATGTCAGAAACTGAATCAGATAATAAGGATAGTTTAAAAAAGAAAAAGAAGTC
AAAGGATATAACTGAGAAAGAAAAGGATGTTAAAGGACTCAGCAAAAAAAGAAAAATGTATCCTGAAGATAAACCTTTAT
CATCTGAGTCCCTATCAGAATCAGATTATACTGAGGAGGTACGAGCAAAAAAGAAGAAGAGCAGTGAAGAACGAGAAAAA
ACAACAACATCAGAGAGTCAAGAAAAAACAAAAAAGAAAAAGAAGCATAAGAAACACAGTAAGAAGAAGAAAAAGAAGGC
TGCTAGTTCAAGTCCTGACTCACCATAG

Library Parental gene expression (RPM)
SRP014902_placenta 2 .12 RPM
SRP014902_testis 10 .75 RPM
SRP018288_heart 13 .15 RPM
SRP018288_kidney 26 .10 RPM
SRP018288_liver 18 .07 RPM
SRP018288_lung 18 .74 RPM
SRP018856_adipose 9 .03 RPM
SRP035408_brain 129 .39 RPM
SRP035408_liver 29 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007438 ortholog_one2one 1 retrogene
retro_amel_102,
Callithrix jacchus ENSCJAG00000013910 ortholog_one2one 3 retrogenes
retro_cjac_1084, retro_cjac_1163, retro_cjac_4095,
Equus caballus ENSECAG00000026810 ortholog_one2one 1 retrogene
retro_ecab_95,
Homo sapiens ENSG00000234545 ortholog_one2one 4 retrogenes
retro_hsap_2336, retro_hsap_3179, retro_hsap_55, retro_hsap_577,
Loxodonta africana ENSLAFG00000029755 ortholog_one2one 1 retrogene
retro_lafr_594,
Myotis lucifugus ENSMLUG00000005933 ortholog_one2one 1 retrogene
retro_mluc_2301,
Macaca mulatta ENSMMUG00000019802 ortholog_one2one 4 retrogenes
retro_mmul_1415, retro_mmul_226, retro_mmul_420, retro_mmul_765,
Mus musculus ENSMUSG00000058503 ortholog_one2one 2 retrogenes
retro_mmus_3481, retro_mmus_3519,
Nomascus leucogenys ENSNLEG00000015333 ortholog_one2many 1 retrogene
retro_nleu_14,
Pongo abelii ENSPPYG00000025825 ortholog_one2many 1 retrogene
retro_pabe_225,
Rattus norvegicus ENSRNOG00000009163 ortholog_one2one 1 retrogene
retro_rnor_2891,
Ictidomys tridecemlineatus ENSSTOG00000028195 ortholog_one2one 1 retrogene
retro_itri_12,
Tupaia belangeri ENSTBEG00000011674 ortholog_one2one 1 retrogene
retro_tbel_1,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_49 56.04 73.82
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Download FASTA sequences of all ENSSSCG00000015317 retrocopies