RetrogeneDB ID: | retro_sara_178 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_5966:30705..31106(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSSARG00000000717 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 53.47 % |
Parental protein coverage: | 97.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | EAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPD |
EAH.DVKT.DGY...LFC..F...........S...H.Q..Q.......I...E..T....E........ | |
Retrocopy | EAHIDVKTNDGY---LFCL-FVLVALRSTTARSGRPHAQLQQVHQIWKQIT--EIKT---QELQTNDFKE |
Parental | SIGKDIEK-ACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPV |
...KD.EK.A.QS.Y.LHDVFVRKV.MLKKPKFEL.KL.ELHGE.S..GKATGDET.AKVE.A..YEPPV | |
Retrocopy | AVNKDMEK<AHQSVYSLHDVFVRKVEMLKKPKFELRKLPELHGECSRYGKATGDETDAKVESAIEYEPPV |
Parental | QESV |
.ESV | |
Retrocopy | KESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macaca mulatta | ENSMMUG00000021821 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000969 | 6 retrocopies | |
Mus musculus | ENSMUSG00000028081 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011893 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000717 | 15 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000015088 | 2 retrocopies |