RetrogeneDB ID: | retro_sara_401 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_193890:6728..7052(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSSARG00000000717 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 53.57 % |
Parental protein coverage: | 76.03 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | SYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLI-PDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPK |
S...HQQV.Q....MMEI.T.EV.TNDLKEV....I.P........K.CQ.I.P.HDVFVRK.KM.K... | |
Retrocopy | SRSKHQQVHQ-SWEMMEITT*EVETNDLKEVTGQ*IDPRQPWERHGKSCQFICPFHDVFVRKGKMPKMLM |
Parental | FELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
FE..K...LH.EG..SGK..GDE....V..ADGYE.P.Q.SV | |
Retrocopy | FERAKFTALHDEGMLSGKVPGDEA---VVQADGYELPAQKSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macaca mulatta | ENSMMUG00000021821 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000969 | 6 retrocopies | |
Mus musculus | ENSMUSG00000028081 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011893 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000717 | 15 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000015088 | 2 retrocopies |