RetrogeneDB ID: | retro_sara_762 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_89011:1..289(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSSARG00000000717 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 88. % |
Parental protein coverage: | 64.38 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 6 |
Parental | IMTR-EVQT-NDLKEV-VNKLIPDSIGK-DIEK-ACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEG |
IMTR.EVQT.NDLKEV..NKLIPDSI.K.DIEK.ACQSIYP.HDVFVRKVKMLKKPKFELGKLMEL.GEG | |
Retrocopy | IMTR>EVQT>NDLKEV>INKLIPDSIEK>DIEK>ACQSIYPVHDVFVRKVKMLKKPKFELGKLMELLGEG |
Parental | SSSGKATGDETGAKVERADGYEPPV-QESV |
SSSGKATGDETGAKVE.ADGY.PPV.QESV | |
Retrocopy | SSSGKATGDETGAKVEWADGYNPPV>QESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macaca mulatta | ENSMMUG00000021821 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000969 | 6 retrocopies | |
Mus musculus | ENSMUSG00000028081 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011893 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000717 | 15 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000015088 | 2 retrocopies |