RetrogeneDB ID: | retro_sara_666 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_255018:17042..17464(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSSARG00000000717 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 65.49 % |
Parental protein coverage: | 95.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | TMIEAHVDVKTTDGYLLRLFCVGFTK-KRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNK |
TMIE...DVKTT...L.R...VGFT..KR.....K.SYAQHQ...QI.KKM.E.MT.EVQTNDLKE.V.K | |
Retrocopy | TMIEDDIDVKTTENQLPRPLYVGFTF*KRDHPSWKASYAQHQRGCQIQKKMIENMTQEVQTNDLKEAVDK |
Parental | LIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFE-LGKLMELHGEGSSSGKATGDETGAKVERADGY |
LIPDS.GKD.E.ACQSIYPLHDVFVRK.KMLKKPK.E..G....L..EG..SGKATGD..G..V..ADG. | |
Retrocopy | LIPDSSGKDTENACQSIYPLHDVFVRKAKMLKKPKLE<MGEVRVLRVEGGGSGKATGDKIGDSVGQADGQ |
Parental | EP |
EP | |
Retrocopy | EP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macaca mulatta | ENSMMUG00000021821 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000969 | 6 retrocopies | |
Mus musculus | ENSMUSG00000028081 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011893 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000717 | 15 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000015088 | 2 retrocopies |