Parental gene:

ENSSHAG00000015088

Aliases:None
Description:None
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL864819.1:1681864..1685648(-)


>ENSSHAG00000015088
AATAACAAGCAGCTAACTTATGGTGGGGTTTTTTCTCTCATTCATAAAGGGGTTGATCCATTTTCCAAGAAGGATTGGTA
TGATGTAAAAGCACCAGCTATGTTCAACATTCGCAATATTGGCAAGACACTGGTGACGAGGACTCAAGGAACAAAAATTG
CCTCTGATGGTCTCAAGGGTCGAGTCTTTGAAGTAAGCCTTGCTGATTTGCAGAATGATGAGGTTGCTTTTCGGAAATTC
AAATTAATTACTGAAGATGTTCAGGGTAAAAATTGTTTGACCAATTTCCATGGAATGGATCTTACCAGGGACAAAATGTG
CTCCATGGTCAAAAAGTGGCAGACTATGATTGAAGCCCATGTTGATGTCAAAACCACCGATGGCTACTTGCTCCGCCTCT
TTTGTGTTGGTTTTACCAAAAAGCGCAACAACCAGATCCGTAAGACCTCTTACGCCCAGCACCAACAGGTCCGTCAGATT
CGTAAGAAAATGATGGAAATCATGACCCGAGAGGTGCAGACAAATGACTTGAAAGAAGTTGTCAATAAACTAATTCCAGA
CAGCATTGGGAAAGACATAGAAAAGGCTTGCCAATCCATTTACCCTCTCCATGATGTATTTGTTCGAAAAGTCAAGATGC
TCAAGAAGCCCAAATTTGAATTGGGAAAACTAATGGAACTTCATGGTGAAGGTGGTGGCTCTGGAAAACCTTCAGGAGAT
GAAACGGGCACAAAAGTTGAAAGGGCTGATGGCTATGAACCACCAGTTCAAGAATCTGTCTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018425 ortholog_one2many 11 retrogenes
retro_amel_1333, retro_amel_1361, retro_amel_1380, retro_amel_1514, retro_amel_159, retro_amel_1697, retro_amel_1732, retro_amel_1739, retro_amel_230, retro_amel_367, retro_amel_863,
Bos taurus ENSBTAG00000009908 ortholog_many2many 3 retrogenes
retro_btau_1284, retro_btau_1733, retro_btau_233,
Canis familiaris ENSCAFG00000007990 ortholog_many2many 7 retrogenes
retro_cfam_103, retro_cfam_146, retro_cfam_169, retro_cfam_170, retro_cfam_179, retro_cfam_222, retro_cfam_77,
Choloepus hoffmanni ENSCHOG00000007238 ortholog_one2many 34 retrogenes
retro_chof_1076, retro_chof_1092, retro_chof_1207, retro_chof_126, retro_chof_1309, retro_chof_1311, retro_chof_1341, retro_chof_1362, retro_chof_1377, retro_chof_1393, retro_chof_1395, retro_chof_1441, retro_chof_1488, retro_chof_1490, retro_chof_1598, retro_chof_1626, retro_chof_2056, retro_chof_2179, retro_chof_220, retro_chof_2201, retro_chof_2282, retro_chof_2417, retro_chof_2465, retro_chof_2500, retro_chof_2613, retro_chof_2628, retro_chof_2635, retro_chof_2668, retro_chof_342, retro_chof_370, retro_chof_685, retro_chof_824, retro_chof_826, retro_chof_912,
Callithrix jacchus ENSCJAG00000002268 ortholog_many2many 7 retrogenes
retro_cjac_2, retro_cjac_21, retro_cjac_249, retro_cjac_312, retro_cjac_337, retro_cjac_368, retro_cjac_78,
Cavia porcellus ENSCPOG00000015569 ortholog_many2many 9 retrogenes
retro_cpor_1154, retro_cpor_1229, retro_cpor_210, retro_cpor_383, retro_cpor_460, retro_cpor_555, retro_cpor_609, retro_cpor_646, retro_cpor_789,
Dipodomys ordii ENSDORG00000002250 ortholog_one2many 10 retrogenes
retro_dord_142, retro_dord_168, retro_dord_193, retro_dord_209, retro_dord_229, retro_dord_314, retro_dord_380, retro_dord_752, retro_dord_757, retro_dord_95,
Equus caballus ENSECAG00000009573 ortholog_many2many 6 retrogenes
retro_ecab_168, retro_ecab_222, retro_ecab_256, retro_ecab_597, retro_ecab_626, retro_ecab_885,
Erinaceus europaeus ENSEEUG00000004994 ortholog_one2many 4 retrogenes
retro_eeur_297, retro_eeur_510, retro_eeur_517, retro_eeur_66,
Felis catus ENSFCAG00000031288 ortholog_many2many 5 retrogenes
retro_fcat_1110, retro_fcat_134, retro_fcat_1878, retro_fcat_780, retro_fcat_858,
Homo sapiens ENSG00000145425 ortholog_one2many 40 retrogenes
retro_hsap_1080, retro_hsap_1178, retro_hsap_1320, retro_hsap_144, retro_hsap_1507, retro_hsap_1559, retro_hsap_1620, retro_hsap_1891, retro_hsap_1994, retro_hsap_2575, retro_hsap_2578, retro_hsap_2607, retro_hsap_2700, retro_hsap_274, retro_hsap_2803, retro_hsap_2908, retro_hsap_2909, retro_hsap_3020, retro_hsap_3112, retro_hsap_313, retro_hsap_3213, retro_hsap_3366, retro_hsap_3675, retro_hsap_3876, retro_hsap_3878, retro_hsap_3879, retro_hsap_3910, retro_hsap_3929, retro_hsap_3931, retro_hsap_4017, retro_hsap_4020, retro_hsap_4021, retro_hsap_588, retro_hsap_602, retro_hsap_613, retro_hsap_683, retro_hsap_789, retro_hsap_838, retro_hsap_888, retro_hsap_914,
Gorilla gorilla ENSGGOG00000003182 ortholog_many2many 2 retrogenes
retro_ggor_70, retro_ggor_97,
Loxodonta africana ENSLAFG00000017660 ortholog_many2many 3 retrogenes
retro_lafr_10, retro_lafr_38, retro_lafr_385,
Microcebus murinus ENSMICG00000004921 ortholog_one2many 9 retrogenes
retro_mmur_1230, retro_mmur_1289, retro_mmur_193, retro_mmur_299, retro_mmur_330, retro_mmur_526, retro_mmur_592, retro_mmur_626, retro_mmur_945,
Myotis lucifugus ENSMLUG00000014788 ortholog_many2many 8 retrogenes
retro_mluc_1197, retro_mluc_1397, retro_mluc_1568, retro_mluc_1846, retro_mluc_2130, retro_mluc_2158, retro_mluc_2388, retro_mluc_862,
Macaca mulatta ENSMMUG00000021821 possible_ortholog 1 retrogene
retro_mmul_2297,
Monodelphis domestica ENSMODG00000000969 ortholog_one2many 6 retrogenes
retro_mdom_1040, retro_mdom_1229, retro_mdom_1396, retro_mdom_1480, retro_mdom_627, retro_mdom_694,
Mustela putorius furo ENSMPUG00000007139 ortholog_many2many 8 retrogenes
retro_mputfur_1293, retro_mputfur_1363, retro_mputfur_278, retro_mputfur_316, retro_mputfur_504, retro_mputfur_695, retro_mputfur_764, retro_mputfur_847,
Mus musculus ENSMUSG00000028081 ortholog_many2many 2 retrogenes
retro_mmus_218, retro_mmus_254,
Nomascus leucogenys ENSNLEG00000005815 ortholog_one2many 26 retrogenes
retro_nleu_1160, retro_nleu_1177, retro_nleu_1402, retro_nleu_1472, retro_nleu_1483, retro_nleu_1487, retro_nleu_1816, retro_nleu_1878, retro_nleu_1992, retro_nleu_209, retro_nleu_2437, retro_nleu_2567, retro_nleu_2571, retro_nleu_2753, retro_nleu_281, retro_nleu_2979, retro_nleu_3087, retro_nleu_443, retro_nleu_526, retro_nleu_654, retro_nleu_658, retro_nleu_758, retro_nleu_767, retro_nleu_799, retro_nleu_942, retro_nleu_962,
Oryctolagus cuniculus ENSOCUG00000007011 ortholog_many2many 1 retrogene
retro_ocun_257,
Procavia capensis ENSPCAG00000015040 ortholog_one2many 6 retrogenes
retro_pcap_211, retro_pcap_286, retro_pcap_355, retro_pcap_420, retro_pcap_456, retro_pcap_57,
Pongo abelii ENSPPYG00000025869 ortholog_one2many 27 retrogenes
retro_pabe_1339, retro_pabe_1572, retro_pabe_1636, retro_pabe_1895, retro_pabe_1899, retro_pabe_2117, retro_pabe_2570, retro_pabe_2578, retro_pabe_2661, retro_pabe_2769, retro_pabe_2779, retro_pabe_2826, retro_pabe_2942, retro_pabe_3014, retro_pabe_3076, retro_pabe_3186, retro_pabe_3214, retro_pabe_3560, retro_pabe_369, retro_pabe_3692, retro_pabe_394, retro_pabe_473, retro_pabe_550, retro_pabe_602, retro_pabe_789, retro_pabe_912, retro_pabe_985,
Pteropus vampyrus ENSPVAG00000015406 ortholog_one2many 24 retrogenes
retro_pvam_1053, retro_pvam_1056, retro_pvam_1058, retro_pvam_1138, retro_pvam_1180, retro_pvam_1203, retro_pvam_1476, retro_pvam_149, retro_pvam_311, retro_pvam_330, retro_pvam_354, retro_pvam_36, retro_pvam_368, retro_pvam_376, retro_pvam_462, retro_pvam_486, retro_pvam_582, retro_pvam_73, retro_pvam_754, retro_pvam_799, retro_pvam_86, retro_pvam_893, retro_pvam_917, retro_pvam_996,
Rattus norvegicus ENSRNOG00000011893 ortholog_many2many 1 retrogene
retro_rnor_198,
Sorex araneus ENSSARG00000000717 ortholog_one2many 15 retrogenes
retro_sara_103, retro_sara_178, retro_sara_238, retro_sara_257, retro_sara_390, retro_sara_401, retro_sara_449, retro_sara_451, retro_sara_482, retro_sara_63, retro_sara_666, retro_sara_676, retro_sara_723, retro_sara_762, retro_sara_91,
Sus scrofa ENSSSCG00000009019 ortholog_many2many 3 retrogenes
retro_sscr_27, retro_sscr_749, retro_sscr_762,
Ictidomys tridecemlineatus ENSSTOG00000024203 ortholog_many2many 1 retrogene
retro_itri_58,
Tupaia belangeri ENSTBEG00000002963 ortholog_many2many 98 retrogenes
retro_tbel_1005, retro_tbel_11, retro_tbel_1119, retro_tbel_116, retro_tbel_1232, retro_tbel_1318, retro_tbel_133, retro_tbel_137, retro_tbel_1375, retro_tbel_1378, retro_tbel_1383, retro_tbel_1417, retro_tbel_1421, retro_tbel_1509, retro_tbel_1686, retro_tbel_1698, retro_tbel_172, retro_tbel_1720, retro_tbel_1721, retro_tbel_1744, retro_tbel_1814, retro_tbel_1829, retro_tbel_1856, retro_tbel_1896, retro_tbel_1948, retro_tbel_1960, retro_tbel_1999, retro_tbel_206, retro_tbel_2200, retro_tbel_2306, retro_tbel_2463, retro_tbel_2483, retro_tbel_2510, retro_tbel_2626, retro_tbel_2654, retro_tbel_2657, retro_tbel_2745, retro_tbel_2759, retro_tbel_2760, retro_tbel_2764, retro_tbel_281, retro_tbel_2857, retro_tbel_2957, retro_tbel_2959, retro_tbel_3114, retro_tbel_317, retro_tbel_3212, retro_tbel_3255, retro_tbel_3259, retro_tbel_3299, retro_tbel_336, retro_tbel_3372, retro_tbel_3416, retro_tbel_3471, retro_tbel_3486, retro_tbel_3513, retro_tbel_3558, retro_tbel_3613, retro_tbel_3631, retro_tbel_3655, retro_tbel_3705, retro_tbel_373, retro_tbel_375, retro_tbel_3755, retro_tbel_3786, retro_tbel_3815, retro_tbel_3823, retro_tbel_3832, retro_tbel_386, retro_tbel_3882, retro_tbel_39, retro_tbel_3947, retro_tbel_3966, retro_tbel_399, retro_tbel_4116, retro_tbel_4144, retro_tbel_4147, retro_tbel_4211, retro_tbel_4220, retro_tbel_423, retro_tbel_4294, retro_tbel_4304, retro_tbel_4347, retro_tbel_438, retro_tbel_4428, retro_tbel_445, retro_tbel_4579, retro_tbel_598, retro_tbel_619, retro_tbel_623, retro_tbel_671, retro_tbel_859, retro_tbel_90, retro_tbel_912, retro_tbel_92, retro_tbel_928, retro_tbel_956, retro_tbel_973,
Tursiops truncatus ENSTTRG00000013094 ortholog_one2many 10 retrogenes
retro_ttru_101, retro_ttru_1014, retro_ttru_1456, retro_ttru_170, retro_ttru_1789, retro_ttru_1945, retro_ttru_263, retro_ttru_319, retro_ttru_779, retro_ttru_940,
Vicugna pacos ENSVPAG00000004235 ortholog_one2many 8 retrogenes
retro_vpac_253, retro_vpac_31, retro_vpac_322, retro_vpac_439, retro_vpac_486, retro_vpac_497, retro_vpac_529, retro_vpac_88,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_shar_95 98.68 87.31
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2. retro_shar_777 66.04 60.00
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Download FASTA sequences of all ENSSHAG00000015088 retrocopies