Parental gene:

RPS3A, ENSMODG00000000969

Aliases:None
Description:ribosomal protein S3A [Source:HGNC Symbol;Acc:10421]
Organism:Opossum (Monodelphis domestica)
Coordinates:5:126862291..126924432(-)


>ENSMODG00000000969
ATGGCGGTGGGCAAGAACAAGCGCCTCACCAAAGGAGGCAAAAAAGGAGCCAAAAAGAAAGTGGTTGATCCATTTTCCAA
GAAAGATTGGTATGATGTCAAAGCACCAGCTATGTTCAATATACGCAATATTGGCAAGACACTGGTTACAAGGACTCAAG
GAACCAAAATTGCCTCTGATGGTCTCAAGGGTCGAGTTTTTGAAGTGAGCCTTGCTGACCTGCAGAATGATGAGGTTGCT
TTTCGTAAGTTCAAGTTAATTACTGAAGATGTCCAGGGTAAAAATTGTTTGACTAATTTCCATGGAATGGACCTTACCCG
GGACAAGATGTGCTCCATGGTCAAAAAGTGGCAGACCATGATCGAAGCCCATGTTGATGTTAAAACCACTGATGGTTATT
TGCTCCGCCTCTTCTGTGTTGGCTTCACCAAAAAGCGCAACAACCAGATCCGTAAGACCTCTTATGCCCAGCACCAACAG
GTCCGTCAAATTCGTAAGAAAATGATGGAAATCATGACCCGGGAGGTGCAGACAAATGACTTGAAAGAAGTTGTCAATAA
ACTGATTCCAGACAGCATTGGAAAAGATATAGAAAAGGCTTGCCAGTCCATTTACCCTCTCCATGATGTATTTGTTCGTA
AAGTCAAGATGCTCAAGAAGCCCAAATTTGAATTGGGAAAACTAATGGAACTGCATGGTGAAGGTGGTGGCTCTGGAAAA
CCTTCAGGAGATGAAACAGGCACAAAAGTAGAAAGGGCTGATGGATATGAACCACCCGTTCAAGAATCTGTCTAA

Library Parental gene expression (RPM)
SRP007412_brain 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018425 ortholog_one2one 11 retrogenes
Bos taurus ENSBTAG00000009908 ortholog_one2many 3 retrogenes
Canis familiaris ENSCAFG00000007990 ortholog_one2many 7 retrogenes
Choloepus hoffmanni ENSCHOG00000007238 ortholog_one2one 34 retrogenes
Callithrix jacchus ENSCJAG00000002268 ortholog_one2many 7 retrogenes
Cavia porcellus ENSCPOG00000015569 ortholog_one2many 9 retrogenes
Dipodomys ordii ENSDORG00000002250 ortholog_one2one 10 retrogenes
Equus caballus ENSECAG00000009573 ortholog_one2many 6 retrogenes
Erinaceus europaeus ENSEEUG00000004994 ortholog_one2one 4 retrogenes
Felis catus ENSFCAG00000031288 ortholog_one2many 5 retrogenes
Homo sapiens ENSG00000145425 ortholog_one2one 40 retrogenes
Gorilla gorilla ENSGGOG00000003182 ortholog_one2many 2 retrogenes
Loxodonta africana ENSLAFG00000017660 ortholog_one2many 3 retrogenes
Microcebus murinus ENSMICG00000004921 ortholog_one2one 9 retrogenes
Myotis lucifugus ENSMLUG00000014788 ortholog_one2many 8 retrogenes
Macaca mulatta ENSMMUG00000021821 possible_ortholog 1 retrogene
Mustela putorius furo ENSMPUG00000007139 ortholog_one2many 8 retrogenes
Mus musculus ENSMUSG00000028081 ortholog_one2many 2 retrogenes
Nomascus leucogenys ENSNLEG00000005815 ortholog_one2one 26 retrogenes
Oryctolagus cuniculus ENSOCUG00000007011 ortholog_one2many 1 retrogene
Procavia capensis ENSPCAG00000015040 ortholog_one2one 6 retrogenes
Pongo abelii ENSPPYG00000025869 ortholog_one2one 27 retrogenes
Pteropus vampyrus ENSPVAG00000015406 ortholog_one2one 24 retrogenes
Rattus norvegicus ENSRNOG00000011893 ortholog_one2many 1 retrogene
Sorex araneus ENSSARG00000000717 ortholog_one2one 15 retrogenes
Sarcophilus harrisii ENSSHAG00000015088 ortholog_one2many 2 retrogenes
Sus scrofa ENSSSCG00000009019 ortholog_one2many 3 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000024203 ortholog_one2many 1 retrogene
Tupaia belangeri ENSTBEG00000002963 ortholog_one2many 98 retrogenes
retro_tbel_1005, retro_tbel_11, retro_tbel_1119, retro_tbel_116, retro_tbel_1232, retro_tbel_1318, retro_tbel_133, retro_tbel_137, retro_tbel_1375, retro_tbel_1378, retro_tbel_1383, retro_tbel_1417, retro_tbel_1421, retro_tbel_1509, retro_tbel_1686, retro_tbel_1698, retro_tbel_172, retro_tbel_1720, retro_tbel_1721, retro_tbel_1744, retro_tbel_1814, retro_tbel_1829, retro_tbel_1856, retro_tbel_1896, retro_tbel_1948, retro_tbel_1960, retro_tbel_1999, retro_tbel_206, retro_tbel_2200, retro_tbel_2306, retro_tbel_2463, retro_tbel_2483, retro_tbel_2510, retro_tbel_2626, retro_tbel_2654, retro_tbel_2657, retro_tbel_2745, retro_tbel_2759, retro_tbel_2760, retro_tbel_2764, retro_tbel_281, retro_tbel_2857, retro_tbel_2957, retro_tbel_2959, retro_tbel_3114, retro_tbel_317, retro_tbel_3212, retro_tbel_3255, retro_tbel_3259, retro_tbel_3299, retro_tbel_336, retro_tbel_3372, retro_tbel_3416, retro_tbel_3471, retro_tbel_3486, retro_tbel_3513, retro_tbel_3558, retro_tbel_3613, retro_tbel_3631, retro_tbel_3655, retro_tbel_3705, retro_tbel_373, retro_tbel_375, retro_tbel_3755, retro_tbel_3786, retro_tbel_3815, retro_tbel_3823, retro_tbel_3832, retro_tbel_386, retro_tbel_3882, retro_tbel_39, retro_tbel_3947, retro_tbel_3966, retro_tbel_399, retro_tbel_4116, retro_tbel_4144, retro_tbel_4147, retro_tbel_4211, retro_tbel_4220, retro_tbel_423, retro_tbel_4294, retro_tbel_4304, retro_tbel_4347, retro_tbel_438, retro_tbel_4428, retro_tbel_445, retro_tbel_4579, retro_tbel_598, retro_tbel_619, retro_tbel_623, retro_tbel_671, retro_tbel_859, retro_tbel_90, retro_tbel_912, retro_tbel_92, retro_tbel_928, retro_tbel_956, retro_tbel_973,
Tursiops truncatus ENSTTRG00000013094 ortholog_one2one 10 retrogenes
Vicugna pacos ENSVPAG00000004235 ortholog_one2one 8 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_627 79.69 72.35
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2. retro_mdom_694 55.23 62.88
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3. retro_mdom_1040 87.27 100.00
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4. retro_mdom_1229 93.94 100.00
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5. retro_mdom_1396 53.79 53.41
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6. retro_mdom_1480 52.43 68.56
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Download FASTA sequences of all ENSMODG00000000969 retrocopies